Crystallography

Software for Single-Crystal X-ray Diffraction

Integrated Workflows for Modern Crystallography

Bruker's software for single-crystal X-ray diffraction guides users through the entire measurement process - from data collection to structure solution. 

Our range includes APEX software for chemical crystallography, PROTEUM software for structural biology, as well as software solutions for automated sample handling and in situ crystallography

Designed for stability and performance, our crystallography software supports both routine measurements and complex analytical workflows in high-throughput environments. 

An intuitive user interface follows the natural progression of the experiment, simplifying setup and analysis while providing clear insight into each step. Integrated workflows connect instrument control, data handling, and analysis - guiding users through the smooth process and maximizing measurement efficiency. This structured approach improves usability and confidence in results.

Comprehensive documentation and traceability enable the creation of consistent, publication-ready reports with minimal effort. Reproducibility is ensured through detailed metadata capture and standardized data exports, supporting seamless integration with downstream tools and external analysis environments.

Generated crystallography report in Bruker's single-crystal X-ray diffraction software. 
Chemical Crystallography

APEX Software - The Central Hub for Advanced Crystal Structure Determination

Our APEX software provides a complete, integrated workflow for crystal structure determination - from instrument control to publication-ready CIFs. Its high-performance multi-core architecture ensures fast and reliable processing, even for complex datasets, such as twinned or modulated structures.

Seamless compatibility with third-party crystallographic software preserves data integrity and supports consistent, publication-quality results that are trusted by leading laboratories worldwide.

APEX Highlights

  • Future-Proof and Performance-Oriented, fully 64-bit compatible.
  • CIRRUS - Cloud-based sample management workflow for crystallography service providers.
  • STRUCTURE NOW - Revolutionary automated structure determination.
  • Reliable data collection strategy calculations, data integration, scaling and structure solution.
  • Outstanding graphical user interface for model building, and refinement.
  • Integrated Database check for CSD, COD and local structures.
  • Reciprocal Space Viewer - Unmatched Handling of Challenging Samples.
  • Central hub for third party crystallographic software.
  • By Crystallographers, for Crystallographers.
  • CPU-intense tasks are fully parallelized.
  • Installs with a single mouse click.
See what is possible using the latest version of APEX in this video. 

Enhanced Features - Improved User Experience

  • Modern Interface: The graphical interface in APEX is more intuitive and user-friendly, catering to both novice and experienced crystallographers.
  • AI-Based Centering: APEX uses advanced deep learning technology for automatic crystal centering, which is faster and more accurate than previous methods.
  • XRD2 Eval Plugin: This new plugin automates µPXRD data acquisition, including frame correlation, merging, and integration, which were not as streamlined in earlier versions.
  • CIF Report Generation: APEX offers more advanced CIF support, including automatic addition of experimental data and processing details, making it easier to generate complete and accurate CIFs.

 

Get in touch with your Bruker sales contact for a demo version of APEX.

The latest version of APEX includes AI-driven automatic crystal centering for better data and more efficient measurements.

CIRRUS - Cloud data exchange for Crystallography Service Providers

CIRRUS is a new cloud-based sample management workflow for crystallography service providers. It enables you to conveniently manage your users and their requested jobs in one place. This saves time and ensures your information is always accurate and up-to-date.

CIRRUS provides your users with standardized templates for sample submission, that are seamlessly imported to APEX ensuring you have all the details needed to start the experiment in APEX.

CIRRUS benefits you and your users

  • User-friendly sample submission
  • Streamlined user and job management, efficient scheduling, and faster turnaround times
  • Paper-free digital sample management, saving time and improving information flow
  • Standardized forms ensure complete submissions for successful structural analysis
  • Seamless integration with APEX for convenient and error-free data transfer
  • Enhanced communication and data security, for improved user satisfaction

STRUCTURE NOW

STRUCTURE NOW is our new plug-in for automated structure determination. It applies the latest Artificial Intelligence (AI) technology to automate structure determination for the user.

Automating processes saves you time and energy, makes your job simpler, and incre ases your productivity and efficiency.

STRUCTURE NOW provides ongoing feedback on the progress of the structure determination process. Smart automation when you want it and instant control whenever you need it.

 

Unlock the potential of APEX - Your gateway to enhanced crystallographic research and unparalleled performance.

See how the atomic structure of a metalorganic compound is solved in only 15 minutes using fully automated data collection, processing and structure refinement.
Structural Biology

PROTEUM Software: Macromolecular Crystallography in the Life Sciences

Our PROTEUM software is tailored for macromolecular crystallography, offering intuitive and automated workflows from crystal screening through to structure validation.

Integration with established platforms such as CCP4 and Phenix ensures smooth adoption within academic and industrial environments, supporting both routine protein analysis and more advanced structural biology workflows.

PROTEUM Highlights

  • XPRESSO pipeline for streamlined screening and structure elucidation.
  • Advanced phasing tools with graphical feedback and visualization of density maps.
  • Seamless integration with established crystallography platforms such as CCP4 and Phenix.
  • Comprehensive tools for data integration, scaling, and analysis across the full workflow.
  • Graphical interface designed for clarity, consistency, and efficient interpretation of results.
  • Flexible automation combined with expert-level control for advanced users.
  • Robust handling of complex samples, including support for twinned datasets.
  • Built on validated algorithms and scientific engines for reliable, high-quality results.

 

Get in touch with your Bruker sales contact for a demo version.

Analysis of a quaternary protein structure using PROTEUM software. 
Automation

SCOUT Software: Streamlining Sample Management in Crystallography

Our SCOUT software, in combination with our SCOUT automated management system, streamlines sample handling and data acquisition by integrating robotic control, automated centering, and diffraction-based crystal screening.

Configurable workflows, real-time system monitoring, and structured data export support reproducible, high-throughput crystallography. Access-level customization further ensures consistent operation across multi-user laboratories.

SCOUT software for automated sample handling.
In situ crystallography

ISX Software: Enabling Automated In Situ Crystal Screening

Our ISX software, in combination with the IXS Stage, enables automated in situ crystal screening directly on crystallization plates, eliminating harvesting and preserving delicate samples such as proteins or MOFs.

By combining optical sample selection, automated measurement, and job queuing, ISX accelerates crystal identification and characterization. This approach supports efficient screening and reliable structure determination under native conditions.

In situ crystal screening via the ISX softwaree

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Discover our Crystallography Solutions

Bruker has a complete range of crystallography solutions designed to meet the needs of every laboratory - from entry-level systems for routine chemical crystallography to in-house beamline solutions that deliver synchrotron-like performance.

See our complete range on the single-crystal X-ray diffraction homepage

Contact an Expert 

Bruker's SC-XRD experts are here to help you determine the best solution for your crystallography. 

Should you have any questions about how our software can help you, or which experimental setup would best fit your requirements and budget reach out to us using the form below.