MetaboScape® Bibliography
2022
MetaboScape® Bibliography 2022
| Title | Author | Publication | Link |
|---|---|---|---|
| Multi-Omics Analysis Revealed a Significant Alteration of Critical Metabolic Pathways Due to Sorafenib-Resistance in Hep3B Cell Lines | Abushawish K.Y.I.; Soliman S.S.M. et al. | 2022 Int. J. Mol. Sci. | https://doi.org/10.3390/ijms231911975 |
| Untargeted Metabolomics of Breast Cancer Cells MCF-7 and SkBr3 Treated With Tamoxifen/Trastuzumab | Sharaf B.M.; Giddey A.D. et al. | 2022 Cancer Genomics & Proteomics | https://doi.org/10.21873/cgp.20305 |
| Untargeted lipidomics reveals specific lipid profiles in COVID-19 patients with different severity from Campania region (Italy) | Ciccarelli M.; Merciai F. et al. | 2022 J. Pharm. Bio. Anal. | https://doi.org/10.1016/j.jpba.2022.114827 |
| Development and application of a fast ultra-high performance liquid chromatography-trapped ion mobility mass spectrometry method for untargeted lipidomics | Merciai F.; Musella S. et al. | 2022 J Chrom A | https://doi.org/10.1016/j.chroma.2022.463124 |
| Untargeted ultra‑high‑resolution mass spectrometry metabolomic profiling of blood serum in bladder cancer | Nizioł J.; Ossoliński K. et al. | 2022 Nature Scientific Reports | https://doi.org/10.1038/s41598-022-19576-9 |
| Untargeted Metabolomic Plasma Profiling of Emirati Dialysis Patients with Diabetes versus Non-Diabetic: A Pilot Study | Banimfreg B.H.; Alshraideh H. et al. | 2022 Biomolecules | https://www.mdpi.com/2218-273X/12/7/962 |
| Impact of Skin Tissue Collection Method on Downstream MALDI-Imaging | Yadav M.; Chaudhary P.P. et al. | 2022 Metabolites | https://doi.org/10.3390/metabo12060497 |
| Thorough Investigation of the Phenolic Profile of Reputable Greek Honey Varieties: Varietal Discrimination and Floral Markers Identification Using Liquid Chromatography–High-Resolution Mass Spectrometry | Koulis G.A.; Tsagkaris A.S. et al. | 2022 Molecules | https://doi.org/10.3390/molecules27144444 |
| Structural amyloid plaque polymorphism is associated with distinct lipid accumulations revealed by trapped ion mobility mass spectrometry imaging | Michno W.; Wherli P.M. et al. | 2022 J of Neurochemistry | https://doi.org/10.1111/jnc.15557 |
| Bioprospecting the Metabolome of Plant Urtica dioica L.: A Fast Dereplication and Annotation Workflow in Plant Metabolomics | Bhattarai K.; Paudel B. et al. | 2022 Evidence-Based Complementary and Alternative Medicine | https://doi.org/10.1155/2022/3710791 |
| Spatially resolved characterization of tissue metabolic compartments in fasted and high-fat diet livers | Stopka S.A.; van der Reest J. et al. | 2022 PLoS One | https://doi.org/10.1371/journal.pone.0261803 |
| Analysis and Comparison of Mouse and Human Brain Gangliosides via Two-Stage Matching of MS/MS Spectra | Huang F.; Bailey L.S. et al. | 2022 ACS Omega | https://doi.org/10.1021/acsomega.1c07070 |
| Non-Targeted Serum Lipidomics Analysis and Potential Biomarkers of Laryngeal Cancer Based on UHPLC-QTOF-MS | Wang H.; Luo Y. et al. | 2022 Metabolites | https://doi.org/10.3390/metabo12111087 |
| Metabolism Reorganization in Kale (Brassica oleracea L. var acephala) Populations with Divergent Glucosinolate Content under Thermal Stresses | Díaz-Urbano M.; Velasco P. et al. | 2022 Agronomy | https://doi.org/10.3390/agronomy12112652 |
2021
MetaboScape® Bibliography 2021
| Title | Author | Publication | Link |
|---|---|---|---|
| Expanding the Scope of Detectable Microbial Natural Products by Complementary Analytical Methods and Cultivation Systems | Bader C.D.; Haack P.A. et al. | 2021 J. Nat. Prod. | https://doi.org/10.1021/acs.jnatprod.0c00942 |
| Metabolic Dynamics of In Vitro CD8+ T Cell Activation | Edwards-Hicks J.; Mitterer M. et al. | 2021 Metabolites | https://doi.org/10.3390/metabo11010012 |
| Complementing Matrix-Assisted Laser Desorption Ionization-Mass Spectrometry Imaging with Chromatography Data for Improved Assignment of Isobaric and Isomeric Phospholipids Utilizing Trapped Ion Mobility-Mass Spectrometry | Helmer P.O.; Nordhorn I.D.; et al. | 2021 Anal. Chem. | https://dx.doi.org/10.1021/acs.analchem.0c03942 |
| Distribution and degradation trend of micropollutants in a surface flow treatment wetland revealed by 3D numerical modelling combined with LC-MS/MS | Maurer L.; Villette C. et al. | 2021 Water Res. | https://doi.org/10.1016/j.watres.2020.116672 |
| Analysis of the metabolic switch induced by the spirulina peptide SP6in high fat diet ApoE-/-mice model: A direct infusion FT-ICR-MS basedapproach | Sommella E.; Carrizzo A. et al. | 2021 J. Pharm. Bio. Anal. | https://doi.org/10.1016/j.jpba.2020.113865 |
| Comparison of lipidome profiles of Caenorhabditis elegans—results from an inter‑laboratory ring trial | Spanier B.; Laurençon A. et al. | 2021 Metabolomics | https://doi.org/10.1007/s11306-021-01775-6 |
| Metabolomic Profiling of Human Urine Samples Using LC-TIMS-QTOF Mass Spectrometry | Di Poto C.; Tian X. et al. | 2021 JASMS | https://doi.org/10.1021/jasms.0c00467 |
| Metabolome-based profiling of African baobab fruit (Adansonia digitata L.) using a multiplex approach of MS and NMR techniques in relation to its biological activity | Baky M.H.; Badawy M.T. et al. | 2021 RSC Adv. | https://doi.org/10.1039/D1RA08277A |
| Multiomics Method Enabled by Sequential Metabolomics and Proteomics for Human Pluripotent Stem-Cell-Derived Cardiomyocytes | Bayne E.F.; Simmons A.D. et al. | 2021 J. Proteome Res. | https://doi.org/10.1021/acs.jproteome.1c00611 |
| High-Resolution Mass Spectrometry for the Comprehensive Characterization of Plant-Pigment-Based Tattoos and Dyes Formulations | Rubio L.; Garcia-Jares C. and Lores M. | 2021 Cosmetics | https://doi.org/10.3390/cosmetics8020055 |
| Comparative sphingolipidomic analysis reveals significant differences between doxorubicin-sensitive and -resistance MCF-7 cells | Shammout O.D.A.; Ashmawy N.S. et al. | 2021 PLoS One | https://doi.org/10.1371/journal.pone.0258363 |
| Trapped Ion Mobility Incorporated in LC–HRMS Workflows as an Integral Analytical Platform of High Sensitivity: Targeted and Untargeted 4D-Metabolomics in Extra Virgin Olive Oil | Drakopoulou S.K.; Damalas D.E. et al. | 2021 J. Agric. Food Chem | https://doi.org/10.1021/acs.jafc.1c04789 |
| Circulating exosomes and gut microbiome induced insulin resistance in mice exposed to intermittent hypoxia: Effects of physical activity | Khalyfa A.; Ericsson A. et al. | 2021 eBioMedicine | https://doi.org/10.1016/j.ebiom.2021.103208 |
| Metabolomics approach to understand the hepatitis C virus induced hepatocellular carcinoma using LC-ESI-MS/MS | Kumari S.; Ali A. et al. | 2021 Arab J of Chem | https://doi.org/10.1016/j.arabjc.2020.11.013 |
2020
MetaboScape® Bibliography 2020
| Title | Author | Publication | Link |
|---|---|---|---|
| A fungal pathogen induces systemic susceptibility and systemic shifts in wheat metabolome and microbiome composition | Seybold, H.; Demetrowitsch, T.J. et al. | 2020. Nature Communications | https://doi.org/10.1038/s41467-020-15633-x |
| A simultaneous exploratory and quantitative amino acid and biogenic amine metabolic profling platform for rapid disease phenotyping via UPLC-QToF-MS | Gray, N.; Lawler, N.G. et al. | 2020. Talanta | https://doi.org/10.1016/j.talanta.2020.121872 |
| An enhanced Isotopic Fine Structure method for exact mass analysis in discovery metabolomics: FIA-CASI-FTMS | Thompson, C.J.; Witt, M. et al. | 2020. J. Am. Soc. Mass Spectrom | https://doi.org/10.1021/jasms.0c00047 |
| An untargeted metabolomic approach for the putative characterization of metabolites from Scenedesmus obliquus in response to cadmium stress | Mangal, V.; Nguyen, T.Q. et al. | 2020. Environmental Pollution | https://doi.org/10.1016/j.envpol.2020.115123 |
| Development of a NanoLC-MS workflow for high-sensitivity global lipidomic analysis | Buzatto, A.z.; Kwon, B.K. et al. | 2020. Analytica Chimica Acta | https://doi.org/10.1016/j.aca.2020.09.001 |
| Distribution and degradation trend of micropollutants in a surface flow treatment wetland revealed by 3D numerical modelling combined with LC-MS/MS | Maurer, L.; Villette, C. et al. | 2020 / 2021. Water Research | https://doi.org/10.1016/j.watres.2020.116672 |
| Effect of ultraviolet radiation on the metabolomic profiles of potentially toxic cyanobacteria | Jacinavicius, F.R.; Geraldes, V. et al. | 2020. FEMS Microbial Ecology | https://doi.org/10.1093/femsec/fiaa243 |
| Environmental exposure to phthalates and dementia with Lewy bodies: contribution of metabolomics | Agin, A.; Blanc, F. et al. | 2020. J Neurol Neurosurg Psychiatry | http://dx.doi.org/10.1136/jnnp-2020-322815 |
| Evaluation of the deterioration state of archaeological wooden artifacts: A nondestructive protocol based on direct analysis in real time – mass spectrometry (DART-MS) coupled to chemometrics | Guo, J.; Zhang, M. et al. | 2020. Analytical Chemistry | https://doi.org/10.1021/acs.analchem.0c01429 |
| Expanding the scope of detectable microbial natural products by complementary analytical methods and cultivation systems | Bader, C.D.; Haack, P.A. et al. | 2020. ChemRxiv – under review | https://doi.org/10.26434/chemrxiv.12497537.v1 |
| Feature-based molecular networking in the GNPS analysis environment | Nothias, L.F.; Petras, D. et al. | 2020. Nature Methods | https://doi.org/10.1038/s41592-020-0933-6 |
| Influence of abiotic stress factors on the antioxidant properties and polyphenols profile composition of green barley (Hordeum vulgare L.) | Kowalczewski, P.L.; Radzikowska, D. et al. | 2020. International Journal of Molecular Sciences | https://doi.org/10.3390/ijms21020397 |
| Investigating time dependent cocoa bean fermentation by ESI-FT-ICR mass spectrometry | Kuhnert, N.; D’souza, R.N. et al. | 2020. Food Research International | https://doi.org/10.1016/j.foodres.2020.109209 |
| In vivo characterisation of the toxicological properties of DPhP, one of the main degradation product of aryl phosphate esters | Ruby, S.; Marín-Sáez, J. et al. | 2020. bioRxiv. under review | https://www.biorxiv.org/content/10.1101/2019.12.26.888057v2 |
| Large scale micropollutants and lipids screening in the sludge layers and the ecosystem of a vertical flow constructed wetland | Maurer, L.; Villette, C. et al. | 2020. Science of The Total Environment | https://doi.org/10.1016/j.scitotenv.2020.141196 |
| Lipidomic analyses uncover apoptotic and inhibitory effects of pyrvinium pamoate on cholangiocarcinoma cells via mitochondrial membrane potential dysfunction | Kittirat, Y.; Phetcharaburanin, J. et al. | 2020. Research Square – under review | https://www.researchsquare.com/article/rs-110218/v1 |
| Lipidome alterations induced by cystic fibrosis, CFTR mutation, and lung function | Buzatto, A.Z.; Abdel Jabar, M. et al. | 2020. Journal of Proteome Research | https://dx.doi.org/10.1021/acs.jproteome.0c00556 |
| Matrix solid-phase dispersion as a greener alternative to obtain bioactive extracts from Haematococcus pluvialis. Characterization by UHPLC-QToF | Castillo, A.; Pereira, S. et al. | 2020. RSC Advances | https://doi.org/10.1039/d0ra04378h |
| Metabolomics analysis reveals tissue-specific metabolite compositions in leaf blade and traps of carnivorous Nepenthes plants | Dávila-Lara, A.; Rodríguez-López, C.E. et al. | 2020. International Journal of Molecular Sciences | https://doi.org/10.3390/ijms21124376 |
| Molecular networking aided metabolomic profiling of beet leaves using three extraction solvents and in relation to its anti-obesity effects | Hegazia N.M.; Radwan, R.A. et al. | 2020. Journal of Advanced Research | https://doi.org/10.1016/j.jare.2020.06.001 |
| MS Imaging-Guided Microproteomics for Spatial Omics on a Single Instrument | Dewez, F.; Oejten, J. et al. | 2020. Proteomics | https://doi.org/10.1002/pmic.201900369 |
| Myxobacteria-derived outer membrane vesicles: Potential applicability against intracellular infections | Goes, A.; Lapuhs, P. et al. | 2020. Cells | https://doi.org/10.3390/cells9010194 |
| Prenatal and early postnatal cerebral D‑aspartate depletion influences L‑amino acid pathways, bioenergetic processes, and developmental brain metabolism | Grimaldi, M.; Marino, C. et al. | 2020. Journal of Proteome Research | https://dx.doi.org/10.1021/acs.jproteome.0c00622 |
| Software tools, databases and resources in metabolomics: updates from 2018 to 2019 | O’Shea, K.; Misra, B.B. | 2020. Metabolomics | https://doi.org/10.1007/s11306-020-01657-3 |
| Supercritical fluid extraction enhances discovery of secondary metabolites from Myxobacteria | Bader, C.D.; Neuber, M. et al. | 2020. Analytical Chemistry | https://doi.org/10.1021/acs.analchem.0c02995 |
| The pomace extract taurisolo protects rat brain from Ischemia-reperfusion injury | Lapi, D.; Stornaiuolo, M. et al. | 2020. Frontiers in Cellular Neuroscience | https://doi.org/10.3389/fncel.2020.00003 |
| The application of ion mobility-mass spectrometry in untargeted metabolomics: From separation to identification | Luo, M.-D.; Zhou Z.-W. et al. | 2020. Journal of Analysis and Testing | https://doi.org/10.1007/s41664-020-00133-0 |
| Trapped ion mobility spectrometry and PASEF enable in-depth lipidomics from minimal sample amounts | Vasilopoulou, C.G.; Sulek, K. et al. | 2020. Nature Communications | https://doi.org/10.1038/s41467-019-14044-x |
| Ultrahigh-resolution mass spectrometry-based platform for plasma metabolomics applied to type 2 diabetes research | Zhu, Y.; Wancewicz, B. et al. | 2020. Journal of Proteome Research | https://dx.doi.org/10.1021/acs.jproteome.0c00510 |
| Untargeted-metabolomics differentiation between poultry samples slaughtered with and without detaching spinal cord | Abbas, N.; Ali, A. et al. | 2020. Arabian Journal of Chemistry | https://doi.org/10.1016/j.arabjc.2020.10.032 |
2019
MetaboScape® Bibliography 2019
| Title | Author | Publication | Link |
|---|---|---|---|
| A boost in mitochondrial activity underpins the cholesterol-lowering effect of Annurca apple polyphenols on Hepatic cells | Sommella, E.; Badolati, N. et al. | 2019. Nutrients | https://doi.org/10.3390/nu11010163 |
| A substrate of the ABC transporter PEN3 stimulates bacterial flagellin (flg22)-induced callose deposition in Arabidopsis thaliana | Matern, A.; Böttcher, C. et al. | 2019. Journal of Biological Chemistry | http://www.jbc.org/cgi/doi/10.1074/jbc.RA119.007676 |
| Early Pep-13-induced immune responses are SERK3A/B dependent in potato | Nietzschmann, L.; Gorzolka, K. et al. | 2019. Nature Scientific Reports | https://doi.org/10.1038/s41598-019-54944-y |
| Exploring the capability of LC-MS and GC-MS multi-class methods to discriminate Virgin Olive Oils from different geographical indications and to identify potential origin markers | Olmo-García, L.; Wendt, K. et al. | 2019. European Journal of Lipid Science and Technology | https://doi.org/10.1002/ejlt.201800336 |
| Exploring the promiscuous enzymatic activation of unnatural polyketide extender units in vitro and in vivo for monensin biosynthesis | Grote M; Schulz F. | 2019. CHEMBIOCHEM | https://doi.org/10.1002/cbic.201800734 |
| Generation of a Collision Cross Section library for multi-dimensional plant metabolomics using UHPLC-Trapped Ion Mobility-MS/MS | Schroeder, M.; Meyer, S.W. et al. | 2019. Metabolites | https://doi.org/10.3390/metabo10010013 |
| Global metabolomic characterizations of Microcystis spp. highlights clonal diversity in natural bloom-forming populations and expands metabolite structural diversity | Le Manach, S.; Duval, C. et al. | 2019. Frontiers in Microbiology | https://doi.org/10.3389/fmicb.2019.00791 |
| Honey extracts inhibit PTP1B, upregulate insulin receptor expression, and enhance glucose uptake in human HepG2 cells | Lori, G.; Cecchi, L. et al. | 2019. Biomedicine & Pharmacotherapy | https://doi.org/10.1016/j.biopha.2019.108752 |
| Hydroxycinnamic acids in sunflower leaves serve as UV-A screening pigments | Stelzner, J.; Roemhild, R. et al. | 2019. Photochemical & Photobiological Sciences | https://doi.org/10.1039/C8PP00440D |
| Identification of crucial bottlenecks in engineered polyketide biosynthesis | Grote, M.; Kushnir, S. et al. | 2019. Organic & Biomolecular Chemistry | https://doi.org/10.1039/C9OB00831D |
| Impact of Cr(VI) on the oxidation of polyunsaturated fatty acids in Helianthus annuus roots studied by metabolomic tools | Gonzalez Ibarra, A.A.; Wrobel, K. et al. | 2019. Chemosphere | https://doi.org/10.1016/j.chemosphere.2018.12.145 |
| In situ localization of micropollutants and associated stress response in Populus nigra leaves | Villette, C.; Maurer, Delecolle, J. et al. | 2019. Environment International | https://doi.org/10.1016/j.envint.2019.02.066 |
| Insights into the diversity of secondary metabolites of planktothrix using a biphasic approach combining global genomics and metabolomics | Tiam, S.K.; Gugger, M. et al. | 2019. Toxins | https://doi.org/10.3390/toxins11090498 |
| JASSY, a chloroplast outer membrane protein required for jasmonate biosynthesis | Guana, L.; Denkert, N. et al. | 2019. PNAS | https://doi.org/10.1073/pnas.1900482116 |
| Plastoglobular protein 18 is involved in chloroplast function and thylakoid formation | Espinoza-Corral, Heinz, S.; Klingl, A. et al. | 2019. Journal of Experimental Botany | https://doi.org/10.1093/jxb/erz177 |
| Semi-polar root exudates in natural grassland communities | Dietz, S.; Herz, K. et al. | 2019. Ecology and Evolution | https://doi.org/10.1002/ece3.5043 |
| UHPLC-MS Analyses of Plant Flavonoids | Lei, Z.; Sumner, B.W. et al. | 2019. Current Protocols in Plant Biology | https://doi.org/10.1002/cppb.20085 |
| Xenobiotics metabolization in Salix alba leaves uncovered by mass spectrometry imaging | Villette, C.; Maurer, L. et al. | 2019. Metabolomics | https://doi.org/10.1007/s11306-019-1572-8 |
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