Mass Spectrometry Software Updates

• Unlock the full potential of your mass spectrometry data with Bruker Daltonics’ Software Newsletter! 
• Stay ahead of the curve with the latest updates and insights on powerful tools like SCiLS™ Lab, MetaboScape^®, Bruker ProteoScape™, and OmniScape™.

• Whether you’re delving into proteomics, metabolomics, or spatial omics, our newsletter is your gateway to cutting-edge software solutions, expert tips, and exclusive content designed to enhance your research and streamline your workflows. Don’t miss out—subscribe today and take your life science discoveries to the next level!

• Learn more on how to transform your imaging mass spectrometry data with SCiLS™ Lab, the world-leading software for analysis of mass spectrometry imaging data from all major mass spectrometry vendors, including Bruker’s FLEX series and MRMS.

• SCiLS™ Lab is designed to provide comprehensive analysis and visualization of spatial omics data, enabling you to uncover intricate molecular patterns and insights with ease. 

• It offers advanced statistical tools, intuitive workflows, and high-resolution imaging capabilities, making it an essential tool for researchers in fields such as pathology, pharmacology, and biomarker discovery. Enhance your research with precise, reproducible results and gain deeper understanding of your samples. Experience the future of spatial omics with SCiLS Lab today!

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• MetaboScape^® is our all-in-one software suite dedicated to discovery metabolomics, lipidomics and phenomics. It provides the powerful T-ReX^® algorithm family together with comprehensive statistics and CCS-aware compound identification workflows. Its main purpose is to allow users to readily pinpoint and identify relevant drugs, metabolites, lipids or glycans to set them in a biological context.

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• Unlock the full potential of your proteomics research with Bruker ProteoScape™! This innovative software is designed to streamline the analysis of complex proteomic data, offering advanced tools for protein identification, quantification, and characterization. 

• With Bruker ProteoScape™, you can effortlessly navigate large datasets, uncovering critical insights and biological significance with precision and ease. Its user-friendly interface and powerful algorithms ensure accurate, reproducible results, making it an indispensable asset for researchers in fields such as biomarker discovery, disease research, and drug development. 

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• Learn how to elevate your targeted screening and quantitation workflows with Bruker’s TASQ^® software! Designed for precision and efficiency, TASQ^® (Target Analysis for Screening and Quantitation) offers robust data processing capabilities, enabling you to confidently identify and quantify compounds in complex samples.

• With its intuitive interface and advanced, CCS-enabled and LC-free algorithms, TASQ^® streamlines your analysis, reduces manual effort, and enhances data accuracy. Whether you’re working in environmental analysis, food safety, or clinical research, TASQ^® empowers you to achieve reliable results faster.

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• Transform unknown protein spectra into confirmed proteoform sequences. Bruker OmniScape™ works with unknowns, De novo annotation and homology searches simplify the identification of unknowns. Also with High confidence verification, Novel OmniWave deisotoping algorithm delivers unmatched performance to analyze congested MSn spectra. An flexible interface for easy parameter optimization and flexible input format facilitate the use of multiple data sources.

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BioPharma Compass^® provides integrated workflows for biopharmaceutical industry supporting 21 CFR Part 11 requirements. Workflows comprise all aspects from data acquisition to report generation, characterization, and comparative quantitative assessments in multiple attribute monitoring (MAM) analyses. MAM peptide analysis as well as host cell protein (HCP) analyses can benefit from the use of CCS-enabled data analysis in terms of sequence coverage and dynamic range. Multi-Target-Screening workflows enable batchwise processing multiple samples. OligoQuest™ enables oligonucleotide sequence analysis using LC-UV-MS/MS including side product quantitation and identification or targeted analysis.

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TDF-SDK is a software library that can be linked to third-party software in order to provide programmatic access to the raw data acquired by Bruker timsTOF instruments. TDF-SDK supports reading tdf and tsf files stored in .d directories. (It does not support the baf format, though.) tdf and tsf are the file formats produced by all current Bruker timsTOF instruments. TDF-SDK has been designed for ease of use, high speed, and flexibility with respect to programming language and platform. The archive includes Windows and Linux versions, documentation, and example programs in C++ and Python. 

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