Poster Hall Proteomics

Poster 2024: Dia-PASEF for in-depth immunopeptidomics analysis: Challenges and new opportunities

Poster 2024: The timsTOF Ultra enables deep global ubiquitinomics of ultra-low protein input samples for validating degrader drug targets

Poster 2024: Low-Variation Proteome Profiling Across 11 Labs, Identifying 7200+ Protein Groups in 5 Minutes with dia-PASEF

Poster 2024: Providing an analytical platform for state-of-the-art absolute apolipoprotein quantification in human blood plasma using prm-PASEF

Poster 2024: TIMS DIA-NN 3.0: Improved Algorithms to enhance peptide detection with confidence and accuracy

Poster 2024: TIMSrescore: timsTOF-optimized PSM rescoring boosts identification rates for immunopeptidomics

Poster 2024: A CCS-centric HLA-specific trained de novo module for precise and accurate real-time immunopeptide identification on the Bruker ProteoScape platform

Poster 2024: Increasing throughput while maintaining coverage depths in single cell proteomics using the timsTOF Ultra

Poster 2024: High-throughput plasma proteomics with cap-flow LC separation and dia-PASEF-MS/MS detection

Poster 2024: dia-PASEF proteomic analysis of HNSCC tumor and stroma enriched sections from FFPE samples prepared with laser capture microdissection

Poster 2024: Improved proteome coverage combined with reproducible quantitation on the timsTOF platform

Poster 2024: Scalable single cell analysis towards 1000 samples per day using the Evosep whisper zoom methods on the timsTOF Ultra2

Poster 2024: Evaluation of diagonal-PASEF for data independent acquisition in proteomics

Poster 2024: Maximizing immunopeptide identification and reproducibility from minute pediatric solid tumor biopsy samples

Poster 2023: TIMS DIA-NN: Deep Learning for DIA Data Analysis

Poster 2023: Pushing DIA proteomics analyses of neat plasma to 1000 protein groups ID/h

Poster 2023: Data - Information - Knowledge effortlessly: Combining timsTOF data with PaSER™ information and Mass Dynamics knowledge to accelerate proteomic discoveries

Poster 2023: Optimized methods to investigate the human lysosomal proteome by targeted proteomics

Poster 2023: Microflow 4D-Proteomics™ for robust, high-throughput sample analysis

Poster 2023: Single cell proteome analysis with ultra-high sensitivity using timsTOF SCP and timsTOF Ultra

Poster 2023: Deeper plasma proteome coverage enables identification of novel biomarkers and classification of diseases

Poster 2023: dia-PASEF^® Visualization Tool: a shiny App for data visualization and exploration of dia-PASEF^® data

Poster 2023: Operating, maintaining, and troubleshooting the sensitivity and robustness of timsTOF platforms for proteomics studies

Poster 2023: TIMSquant™: Precise and scalable MS1 quantification for DDA and DIA using transfer learning, targeted analysis and semi-supervised machine learning

Poster 2023: Precise and accurate real-time de novo sequencing of timsTOF data with the Novor algorithm on the Bruker ProteoScape™ platform

Poster 2023: The GlycoPaSER prototype as a real-time N-glycopeptide identification tool based on the PaSER™ parallel computing platform

Poster 2022: A Deep Dive into Positional Isomers Leveraging CCS Information and Novel Software Tools

Poster 2022: Deep Proteomics Coverage of Human Serum Samples by Trapped Ion Mobility Mass Spectrometry

Poster 2022: dia-PASEF^® for targeted proteomics: development of large scale assay for quantitation of more than 500 proteins in human plasma sample

Poster 2022: Functional diagnostics for congenital disorders of glycosylation from plasma glycopeptide PASEF-DDA data

Poster 2022: High sensitivity immunopeptidomics on the timsTOF SCP mass spectrometer

Poster 2022: LFQ Workflows for Quantitative Results on the Bruker ProteoScape™ Platform

Poster 2022: Versatility of timsTOF platforms for 4-D high throughput and sensitive proteomics studies

Poster 2020: SpatialOMx^® utilizing MALDI-2 technology adds tissue context to traditional Omics data for in-depth investigation of regional cellular processes

Poster 2020: Glycopeptide profiling in a trapped ion mobility quadrupole time-of-flight mass spectrometer (timsTOF Pro) 

Poster 2020: PASEF-DDA enables deep coverage single-shot phosphoproteomics and ion mobility-based elucidaton of phosphosite isomers 

Poster 2020: High throughput quantitative plasma proteomics 

Poster 2020: PASEF-PRM LIVE on the timsTOF Pro 

Poster 2020: Benefits of Collisional Cross Section Assisted Precursor Selection (caps-PASEF) for Cross-linking Mass Spectrometry (XL-MS) 

Poster 2020: High resolution acquisition on TIMS-QTOF for multiplexed proteomics 

Poster 2020: High throughput proteomics Application of dia-PASEF^® and Evosep One for short gradients 

Poster 2020: dia-PASEF^®: Bottom-up proteomics with near optimal ion usage

Poster 2020: A supervised learning approach to select the collision energy maximizing peptide fragmentation in ion mobility-mass spectrometry 

Poster 2020: High-precision ion mobility calibration for dia-PASEF^® analysis increases proteome coverage for high throughput 4D-Proteomics™

Poster 2020: MALDI guided SpatialOMx^® on a timsTOF fleX uncovers proteomic profiles of breast cancer subpopulations

Poster 2019: Turnover optimized short nanoLC gradients on a tims equipped QTOF for high throughput and deep proteome measurements 

Poster 2019: Intact glycopeptide analysis by trapped ion mobility tandem mass spectrometry 

Poster 2019: Characteristics of MALDI-imaging on a new dual ion source QTOF with TIMS separation 

Poster 2019: Evaluation of a tims-Q-TOF instrument for targeted proteomics 

Poster 2019: Establishing a Rapid, Sensitive QC protocol Utilizing Trapped Ion Mobility Mass Spectrometry and Parallel Accumulation Serial Fragmentation 

Poster 2019: diaPASEF^®: toward the ideal mass analyzer with data-independent acquisition and parallel accumulation – serial fragmentation 

Poster 2019: High throughput plasma proteomics with PASEF^® and 4D feature alignment 

Poster 2019: Analysis of Histones from HEK293T Cells using a QTOF with Trapped Ion Mobility and PASEF^® Workflows

Poster 2018: Ion Mobility High Resolution QTOF MS - Impact of PASEF^® on detection of posttranslational modifications 

Poster 2018: Toward the ideal mass analyzer with data-independent acquisition and parallel accumulation - serial fragmentation (diaPASEF^®) 

Poster 2018: CCSPredict: Using a Machine Learning Approach for higher Confidence in Lipid Identification 

Poster 2018: High Sensitivity Phosphoproteomics using PASEF^® on a TIMS-QTOF mass spectrometer

Poster 2024: ENRICH-iST provides enables high coverage of the plasma proteome

Poster 2024: Deep proteome coverage at scale combined with reproducible quantitation on the timsTOF HT

Poster 2024: Ultra-high sensitive Single Cell Proteomics on the timsTOF Ultra

Poster 2024: Unlocking the proteomic potential of FFPE tissues with BeatBox^® and iST: A xylene-free, high-throughput workfow for in-depth proteome analysis

Poster 2024: dia-PASEF Proteomic Analysis of HNSCC Tumor and Stroma Enriched Sections from FFPE Samples Prepared with Laser Capture Microdissection

Poster 2024: Longitudinal data quality monitoring enables improvement of quality management practices: A case study in proteomic research utilizing a digital-twin approach

Poster 2024: Significantly faster library-free dia-PASEF analysis with a Spectronaut integrated workflow in ProteoScape

Poster 2024: The timsTOF Ultra enables deep global ubiquitinomics of ultra-low protein input samples for validating degrader drug targets

Poster 2024: Turbocharging Discovery: Crafting a High-Speed, High-Efficiency Monolithic Column for Breakneck Single-Cell Analysis

Poster 2024: Optimizing LC-MS/MS settings for plasma proteomics analysis with cap-flow LC separation and dia-PASEF

Poster 2024: Advancing Low Input Chromatography: Developing a novel Column for Improved Immunopeptidomics IDs

Poster 2024: TIMSrescore: timsTOF-optimized PSM rescoring boosts identification rates for immunopeptidomics and phosphoproteomics

Poster 2024: dia-PASEF for in-depth immunopeptidomics analysis: Challenges and new opportunities

Poster 2024: Overcoming the dynamic range difculties in CSF samples through a novel enrichment step for biomarker discovery studies

Poster 2024: Unique high-throughput ENRICH-iST workfow for deeper plasma proteome coverage enables discovery of novel biomarkers

Poster 2024: Increasing throughput while maintaining coverage depths in single cell proteomics using the timsTOF Ultra 2

Poster 2024: Assessing cellular responses to treatment in single cell and low cell count spheroids using the cellenONE with proteoCHIP EVO 96 workflow on the timsTOF Ultra 2

Poster 2024: Ultra-sensitive metaproteomics (uMetaP) redefines the “dark” metaproteome, enables single-bacterium resolution, and discovers hidden functions in the gut microbiome

Poster 2024: DeepCCS: Context-aware prediction of peptide collisional cross section increases peptide recovery for out-of-distribution data-independent acquisition (DIA) datasets

Poster 2024: Trapped Ion Mobility Separation (TIMS) in Combination with Scanning Quadrupole Isolation for Data Independent Acquisition in Proteomics

Poster 2024: Improved proteome coverage combined with reproducible quantitation on the timsTOF platform

Poster 2023: Mouse fatty liver proteomes in dda-PASEF and dia-PASEF^® from low input using the timsTOF SCP

Poster 2023: The GlycoPaSER prototype as a real-time N-glycopeptide identification tool based on the PaSER™ parallel computing platform

Poster 2023: Data - Information - Knowledge effortlessly: Combining timsTOF data with Bruker ProteoScape™ information and Mass Dynamics knowledge to accelerate proteomic discoveries

Poster 2023: Deeper plasma proteome coverage enables identification of novel biomarkers and classification of diseases

Poster 2023: BiblioPlasma: A gateway for dia-PASEF^® analysis with a library assembled from almost 4500 depleted plasma runs

Poster 2023: Optimizing dia-PASEF^® isolation window schemes for proteomics measurements on a timsTOF Ultra instrument

Poster 2023: Operating, maintaining, and troubleshooting the sensitivity and robustness of timsTOF platforms for proteomics studies

Poster 2023: dia-PASEF^® Visualization Tool: a shiny App for data visualization and exploration of dia-PASEF^® data

Poster 2023: Microflow 4D-Proteomics™ for robust, high-throughput sample analysis

Poster 2023: Pipetting-free single cell analysis with the label-free proteoCHIP and the proteoCHIP Evo96 for high sensitivity proteomics on the timsTOF SCP and the timsTOF Ultra

Poster 2023: Precise and accurate real-time de novo sequencing of timsTOF data with the Novor algorithm on the Bruker ProteoScape™ platform

Poster 2023: Real-Time de novo sequencing of peptide antigens using Bruker ProteoScape™ for ‚Run and Done‘ 4D-immunopeptidomics

Poster 2023: Standardized, high-throughput platform for automated, rapid, and extensive plasma proteome characterization

Poster 2022: dia-PASEF^® for targeted proteomics: development of large-scale assay for quantitation of more than 500 proteins in human plasma sample

Poster 2022: Maximizing information content in ion mobility-enhanced DIA using overlapping, ion mobility-encoded quadrupole windows

Poster 2022: Diving into the complexity of human haptoglobin-hemoglobin interactions

Poster 2022: X!TandemPipeline++: Software for Ion Mobility-Enabled Quantitative Proteomics in timsTOF Data Format

Poster 2022: 4D proteomic profiling of 200 individuals: a high throughput workflow from sample preparation, dia-PASEF^®-MS to 4D data processing to profiling

Poster 2022: Monitoring 1432 Unique Ras Induced phosphopeptides in dda-PASEF and PRM PASEF^®

Poster 2022: TIMS DIA-NN: CCS-Aware DIA Data Analysis

Poster 2022: Realtime TMT Quantification on the timsTOF series with Bruker ProteoScape™

Poster 2022: A novel supervised learning algorithm for real-time collision energy selection to optimize peptide fragmentation in ion mobility-mass spectrometry

Poster 2022: Rapid and Sensitive Phosphotyrosine Detection from Limited Sample Amounts

Poster 2022: PepMPNN: Ion Mobility prediction for any Post Translational Modification

Poster 2022: Optimizing a dia-PASEF^® acquisition and data analysis for non-depleted plasma for rare disease research

Poster 2022: Combining μSPE Chip-based CE with PRM-LIVE and Dynamic Targeting Scheduling for Warp-speed Selectivity Profiling of Deubiquitinase Small Molecule Inhibitors

Poster 2022: Functional diagnostics for congenital disorders of glycosylation from plasma glycopeptide PASEF-DDA data

Poster 2022: Development of proteomic-biomarker landscape of AY9944-treated mouse brain tissues mimic¬king Smith-Lemli-Opitz syndrome (SLOS) by using DIA-PASEF^® and DIA-FAIMS mass spectrometry

Poster 2022: Towards real-time glycopeptide identification on the timsTOF Pro - Bruker ProteoScape™ platform: virtual precursor enabled peptide-moiety identification

Poster 2022: High sensitivity immunopeptidomics on the timsTOF SCP mass spectrometer

Poster 2022: DDA-PASEF Phosphoproteomics reveals TTBK2 function during ciliogenesis

Poster 2022: Utilization of Fast Photo-Oxidation of Proteins and Top Down Mass Spectrometry for Structural Characterization of Protein Complexes

Poster 2022: Blood Proteomic Profiling of Patients with Yellow Fever by Trapped Ion Mobility Mass Spectrometry

Poster 2022: Proteome characterization of tunneling nanotubes with DDA-PASEF acquisition mode

Poster 2022: Maximizing sensitivity and number of targets: evaluation of prm-PASEF^® with live retention time correction on a single cell-capable ESI-TIMS-Q-TOF platform

Poster 2021: Evaluation of dia-PASEF^® for short gradient using library and library free approaches

Poster 2021: CCS-Aware DIA Data Analysis in Bruker ProteoScape™

Poster 2021: N-glycoproteome from a cancer cell line and its non-tumorigenic cell line combining Fbs1-GYR N-glycopeptide enrichment and trapped-ion-mobility-quadrupole-time-of-flight

Poster 2021: Application of TIMScore to De Novo Search Engine, DeepNovo in Bruker ProteoScape™

Poster 2021: Improved Immuno-affinity Enrichment Combined with Trapped Ion Mobility Mass Spectrometry for Significantly Enhanced PTM Sensitivity 

Poster 2021: Bruker ProteoScape™ powered data streams for real-time processing and feedback

Poster 2021: TIMS Viz for Mobility Offset Mass Aligned interrogation of complex samples

Poster 2021: Comparative evaluation of a new processing pipeline for PASEF^® Label-Free Quantification analysis

Poster 2021: Ultra-sensitive proteome quantification on the timsTOF SCP mass spectrometer

Poster 2021: Advantages of a dynamic polygon for MHC class I and II immunopeptides

Poster 2021: High throughput single-shot proteomics on the timsTOF Pro 2

Poster 2021: Label-free quantification of oxidized peptides in eHAP cell lines via a high-throughput dia-PASEF^® workflow

Poster 2021: Studying human haptoglobin hemoglobin structure and interactions using H/D exchange and timsTOF Pro

Poster 2021: Characterization of the salivary protein repertoire of Covid-19 patients during and after disease - a pilot study

Poster 2020: Deeper proteome coverage of musculoskeletal samples 

Poster 2020: High-precision ion mobility calibration greatly improves diaPASEF^® analysis 

Poster 2020: PASEF-DDA enables deep coverage single-shot phosphoproteomics and ion mobility-based elucidation of phosphosite isomers 

Poster 2020: Streamlined sample processing coupled to PASEF^® strategy for in-depth proteome quantification 

Poster 2020: "TimsPy": access timsTOF Pro data easily from Python 

Poster 2020: New PRM-PASEF^® for highly multiplexed targeted acquisition in clinical samples 

Poster 2020: Comparison of different processing pipelines for diaPASEF^® data 

Poster 2020: Characterization of single-shot plasma proteomics performance using the PASEF^® method and systematic investigation into the quantitative proteome depth 

Poster 2020: PASEF^® for sensitive shotgun proteomics: toward single cell analysis 

Poster 2020: Deep Profiling of Tyrosine Phosphorylation in Gastric Cancer Cells 

Poster 2020: PASEF^® and Bolt: enabling comprehensive analysis via high MS/MS acquisition speed and MS/MS sequencing through vast protein databases in minutes 

Poster 2020: Deep, reproducible and high-throughput FFPE analyses: moving toward large-scale clinical omics applications 

Poster 2020: Bruker ProteoScape™: Parallel Database Search Engine in Real-Time 

Poster 2020: Ion Mobility Mass Spectrometry of Glyco- and Phospho-Peptides 

Poster 2020: Reducing compression effects and expanding the multiplex capabilities on a trapped ion mobility Q-TOF 

Poster 2020: Proteomic Analysis of BALF using the PASEF^® method: toward Lung Cancer Biomarker Discovery with 1D LC separation 

Poster 2020: Trapped Ion Mobility Spectrometry and PASEF^® Enables In-depth Characterization of Protein Ubiquitination from Human Cells 

Poster 2020: Highly Sensitivity Lysine Acetylation Profiling with Trapped Ion Mobility Spectrometry and PASEF ^®

Poster 2020: Enhanced identification of bioactive peptides in meat hydrolysates by 4D peptidomics 

Poster 2020: Simplified high-throughput methods for deep and targeted proteome analysis on the timsTOF Pro 

Poster 2020: High throughput proteomics -  Application of diaPASEF^® for short gradients 

Poster 2020: Parallel accumulation – serial fragmentation combined with data-independent acquisition (diaPASEF^®): Bottom-up proteomics with near optimal ion usage 

Poster 2020: Skyline Support for Proteome-wide Data Analysis of Bruker timsTOF diaPASEF^® Acquisition

Poster 2019: Effects of in-source supercharging and subcharging for glycopeptide analysis in a trapped ion mobility quadrupole time-of-flight mass spectrometer 

Poster 2019: Fast nanoLC separations for high throughput body fluid analysis with a TIMS equipped QTOF and 4D feature alignment 

Poster 2019: Short nanoLC gradients optimize throughput on a tims equipped QTOF for deep proteome measurements 

Poster 2019: High Sensitivity PTM Characterization in Cell Lysates Using Trapped Ion Mobility 

Poster 2019: Analysis of Histones from HEK293 Cells using a QTOF with Trapped Ion Mobility and PASEF^® Workflows

Poster 2019: Proteome quality control addressing qualitative and quantitative needs for trapped ion mobility spectrometry and parallel accumulation serial fragmentation 

Poster 2019: Investigating Phytophthora methylation using Trapped Ion Mobility Spectrometry Mass Spectrometry 

Poster 2019: Identification and Quantitation of Phosphopeptide Positional Isomers using Trapped Ion Mobility Spectrometry and PASEF^®

Poster 2019: Comparison of targeted proteomics approaches on a TIMS-Q-TOF 

Poster 2019: Ion mobility enhanced matching between LC-MS runs improves identification and quantification in MaxQuant 

Poster 2019: Analyzing the neuronal phosphoproteome A systematic comparison of Fusion Lumos and timsTOF Pro data

Poster 2018: Generation of a Collisional Cross Section Library for Plant Metabolomics using Trapped Ion Mobility Spectrometry (TIMS) 

Poster 2018: Routine Analysis of Host Cell Proteins in Antibody Preparations using PASEF^®

Poster 2018: TMT Quantification for Shotgun Proteomics on a Trapped-Ion-Mobility quadrupole-Time-Of-Flight mass spectrometer (TIMS-QTOF) powered by Parallel-Accumulation and Serial-Fragmentation (PASEF^®) 

Poster 2018: Applying Trapped Ion Mobility Separation (TIMS) in combination with Parallel Accumulation Serial Fragmentation (PASEF^®) for analysis of lipidomics samples 

Poster 2018: The PASEF^® method on a TIMS-QTOF mass spectrometer for High Sensitivity Phosphoproteomics 

Poster 2018: Evaluation of TIMS MS and MS/MS data for targeted proteomics 

Poster 2018: Maximized throughput and analytical depth for shotgun proteomics using PASEF^® on a TIMS equipped QTOF

Poster 2018: Evaluation of a timsTOF PRO UHR-Q-TOF bottom-up proteomics platform for Proteoform Profiling and Top-Down approaches 

Poster 2018: PASEF^® on a TIMS-QTOF for reproducible, sensitive and highthroughput shotgun proteomics 

Poster 2018: High speed, high sensitivity and high reproducible and accurate label-free quantification using the PASEF^® method on a TIMS-QTOF

Poster 2018: timsTOF Pro and PASEF^® Multiplying Sequencing Speed and Sensitivity in Mass Spectrometry-based Proteomics

Poster 2018: Trapped Ion Mobility Spectrometry and PASEF^® for Enhanced Observation of Chemically Crosslinked Peptides 

Poster 2018: Rapid Isobaric Peptide Classification by Trapped Ion Mobility Spectrometry 

Poster 2018: Deep proteome mining of FFPE tissue with PASEF^® Technology 

Poster 2018: PEAKS™ Software for the processing of timsTOF Pro PASEF^® data: identification and label-free quantitation 

Poster 2018: Data-dependent auto-MSMS 3D-precursor selection for bottom-up proteomics with Parallel-Accumulation SErialFragmentation (PASEF^®) on a Trapped-Ion-Mobility quadrupole-Time-Of-Flight mass spectrometer (TIMS-QTOF) 

Poster 2018: Application of PASEF^® MS/MS scans to monoclonal antibody peptide mapping

Poster 2022: Label-free single cell analysis workflow on the timsTOF SCP using the cellenONE platform

Poster 2022: Bringing proteomics sensitivity to single cell level with Evosep whisper on the timsTOF SCP

Poster 2022: Advantages of a Dynamic Polygon for MHC Class I and II Immunopeptides

Poster 2022: A quantitative proteomics workflow for urine and spent dialysate using data-dependent and data-independent analyses on a timsTOF Pro instrument

Poster 2022: Single-cell equivalent sensitivity on timsTOF Pro with 35 minutes gradient time enabled by label-free reference run approach

Poster 2018: Applying Trapped Ion Mobility separation (TIMS) in combination with Parallel Accumulation Serial Fragmentation (PASEF^®) for analysis of lipidomics samples

Poster 2023: Evaluating the benefit of dia-PASEF approaches and sample-specific database strategies for metaproteomics of very complex microbiomes

Poster 2018: Enhanced peptide mapping with a PASEF^® enabled ultra high resolution QTOF