|
Metabolomic and Proteomic Profiling of Serum-Derived Extracellular Vesicles from Early-Stage Amyotrophic Lateral Sclerosis Patients
|
Al Ojaimi, Y.; Vallet, N.; Dangoumau, A. et al.
|
J Mol Neurosci 2025, 75, 21
|
https://doi.org/10.1007/s12031-025-02315-w
|
|
A methyltransferase-independent role for METTL1 in tRNA aminoacylation and oncogenic transformation
|
Ali, R.H.; Orellana, E.A.; Lee, S.H. et al.
|
Molecular Cell 2025, 85, 948-961.e11
|
https://doi.org/10.1016/j.molcel.2025.01.003
|
|
Mass spectrometry-based analysis of eccrine sweat supports predictive, preventive and personalised medicine in a cohort of breast cancer patients in Austria
|
Bolliger, M.; Wasinger, D.; Brunmair, J. et al.
|
EPMA Journal 2025, 16, 165–182
|
https://doi.org/10.1007/s13167-025-00396-6
|
|
Leishmania regulates host YY1: Comparative proteomic analysis identifies infection modulated YY1 dependent proteins
|
Brar, H.K.; Chen, E.; Chang, F. et al.
|
PLoS One 2025, 20, e0323227
|
https://doi.org/10.1371/journal.pone.0323227
|
|
Proteomic Changes in Preterminal Serum Samples of Rhesus Macaques Exposed to Two Different Doses of Acute Lethal Total-body Gamma Radiation
|
Carpenter, A.D.; Melendez-Miranda, I.; Li, Y. et al.
|
Radiation Research 2025
|
https://doi.org/10.1667/RADE-25-00029.1
|
|
Linking warmer nest temperatures to reduced body size in seabird nestlings: possible mitochondrial bioenergetic and proteomic mechanisms
|
Casagrande, S.; Dell’Omo, G. et al.
|
Journal of Experimental Biology 2025, 228, jeb249880
|
https://doi.org/10.1242/jeb.249880
|
|
Structure and dynamics determine G protein coupling specificity at a class A GPCR
|
Casiraghi, M.; Wang, H.; Brennan, P.C. et al.
|
Sci. Adv. 2025, 11, eadq3971
|
https://doi.org/10.1126/sciadv.adq3971
|
|
A Comprehensive Proteome of Human Corneal Epithelial Cells Constructed by Cross-platform DIA-Mass Spectrometry
|
Chan, K.K.; Cheung, J.K.; Chung, S.R. et al.
|
Sci Data 2025, 12, 848
|
https://doi.org/10.1038/s41597-025-05004-w
|
|
Surface Double Dendritic Magnetic Microfibrils for Rapid Isolation and Proteomic Profiling of Extracellular Vesicles from Microliters of Biofluids
|
Chang, W., Cai, Y., Sun, J. et al.
|
ACS Nano 2025, 19, 9196–9206
|
https://doi.org/10.1021/acsnano.4c18711
|
|
Ready to dive? Early constraints help juvenile southern elephant seals ( Mirounga leonina ) acclimatize to aquatic life
|
Charlanne, L.; Bertile, F.; Geffroy, A. et al.
|
Journal of Experimental Biology 2025, 228, jeb249813
|
https://doi.org/10.1242/jeb.249813
|
|
Defining enteric bacterial pathogenesis using organoids: Citrobacter rodentium uses EspC, an atypical mucinolytic protease, to penetrate mouse colonic mucus
|
Chen, Y.; Gilliland, A.; Liang, Q. et al.
|
Gut Microbes 2025, 17, 2494717
|
https://doi.org/10.1080/19490976.2025.2494717
|
|
ZBP1 synchronized with periodontopathogenesis as the essential pattern recognition receptor
|
Chen, Y.; You, Y.; Xie, Y. et al.
|
Microbial Pathogenesis 2025, 205, 107678
|
https://doi.org/10.1016/j.micpath.2025.107678
|
|
Blood biomarker fingerprints in a cohort of patients with CHRNE-related congenital myasthenic syndrome
|
Della Marina, A.; Koutsoulidou, A.; Natera-de Benito, D. et al.
|
acta neuropathol commun 2025, 13, 29
|
https://doi.org/10.1186/s40478-025-01946-9
|
|
Versatile Features of an Antibody Mimetic Peptide and Its Variants
|
Dolles, S.; Leukel, S.; Gensberger‐Reigl, S. et al.
|
Journal of Peptide Science 2025, 31, e70005
|
https://doi.org/10.1002/psc.70005
|
|
Precision in Tear Fluid Biomarker Discovery: Quantitative Proteomic Profiling of Small-Volume, Individual Samples Using Capillary Tube Collection
|
Frenia, K.; Fu, Y.; Beatty, M.A. et al.
|
Biomedicines 2025, 13, 386
|
https://doi.org/10.3390/biomedicines13020386
|
|
Uncovering dark mass in population proteomics: Pan-analysis of single amino acid polymorphism relevant to cognition and aging
|
Gao, X.; Yin, Y.; Chen, Y. et al.
|
Cell Genomics 2025, 5, 100763
|
https://doi.org/10.1016/j.xgen.2025.100763
|
|
Post-gastrulation amnioids as a stem cell-derived model of human extra-embryonic development
|
Gharibi, B.; Inge, O.C.K.; Rodriguez-Hernandez, I. et al.
|
Cell 2025, S0092867425004581
|
https://doi.org/10.1016/j.cell.2025.04.025
|
|
Dissecting the properties of circulating IgG against streptococcal pathogens through a combined systems antigenomics-serology workflow
|
Gomez Toledo, A.; Chowdhury, S.; Hjortswang, E. et al.
|
Nat Commun 2025, 16, 1942
|
https://doi.org/10.1038/s41467-025-57170-5
|
|
Molecular insights into myelomeningocele via proteomic analysis of amniotic fluid
|
Guilbaud, L.; Roger, K.; Schmidt, A. et al.
|
Journal of Proteomics 2025, 313, 105372
|
https://doi.org/10.1016/j.jprot.2024.105372
|
|
Extracorporeal photopheresis induces the release of anti-inflammatory fatty acids and oxylipins and suppresses pro-inflammatory sphingosine-1-phosphate
|
Hagn, G.; Cho, A., Zila, N. et al.
|
Inflamm. Res. 2025, 74, 40
|
https://doi.org/10.1007/s00011-025-02007-6
|
|
Gain-of-function PPM1D mutations attenuate ischemic stroke
|
He, W.; Li, Y.; Fan, J. et al.
|
Cell Death Differ 2025
|
https://doi.org/10.1038/s41418-025-01523-6
|
|
Targeting CXCL8 signaling sensitizes HNSCC to anlotinib by reducing tumor-associated macrophage-derived CLU
|
Hu, X.; Ji, Y.; Zhang, M. et al.
|
J Exp Clin Cancer Res 2025, 44, 39
|
https://doi.org/10.1186/s13046-025-03298-7
|
|
Application of Spatial Omics in the Cardiovascular System
|
Hu, Y.; Jia, H.; Cui, H. et al.
|
Research 2025, 8, 0628
|
https://doi.org/10.34133/research.0628
|
|
Human skeletal muscle possesses both reversible proteomic signatures and a retained proteomic memory after repeated resistance training
|
Hulmi, J.J.; Halonen, E.J.; Sharples, A.P. et al.
|
The Journal of Physiology 2025, 603, 2655–2673
|
https://doi.org/10.1113/JP288104
|
|
Antimicrobial dual-crosslinked hydrogel synergizes bioengineered extracellular vesicles for enhanced diabetic wound healing
|
Ju, Y.; Yang, P.; Liu, X. et al.
|
Materials Today Bio 2025, 32, 101870
|
https://doi.org/10.1016/j.mtbio.2025.101870
|
|
Cell-associated galectin 9 interacts with cytotoxic T cells confers resistance to tumor killing in nasopharyngeal carcinoma through autophagy activation
|
Kam, N.-W.; Lau, C.Y.; Lau, J.Y.H. et al.
|
Cell Mol Immunol 2025, 22, 260–281
|
https://doi.org/10.1038/s41423-024-01253-8
|
|
Multicenter Longitudinal Quality Assessment of MS-Based Proteomics in Plasma and Serum
|
Kardell, O.; Gronauer, T.; Von Toerne, C. et al.
|
J. Proteome Res. 2025, 24, 1017–1029
|
https://doi.org/10.1021/acs.jproteome.4c00644
|
|
Mechanical signal modulates prostate cancer immune escape by USP8-mediated ubiquitination-dependent degradation of PD-L1 and MHC-1
|
Ke, Z.-B.; Chen, J.-Y.; Xue, Y.-T. et al.
|
Cell Death Dis 2025, 16, 413
|
https://doi.org/10.1038/s41419-025-07736-4
|
|
TAZ interactome analysis using nanotrap-based affinity purification–mass spectrometry
|
Kelebeev, J.; MacKeracher, A., Miyake, T. et al.
|
Journal of Cell Science 2025, 138, jcs263527
|
https://doi.org/10.1242/jcs.263527
|
|
A spatio-temporal transcriptomic and proteomic dataset of developing Brassica napus seeds
|
Knoch, D.; Rugen, N.; Thiel, J. et al.
|
Sci Data 2025, 12, 759
|
https://doi.org/10.1038/s41597-025-05115-4
|
|
Mass-Spectrometry-Based GEE Footprinting Characterizes Kinetic Mechanisms and Sites of Conformational Change in Amyloid β 1–42 Aggregation
|
Kuang, X.C.; Rempel, D.L.; Lin, Y. et al.
|
ACS Chem. Neurosci. 2025, acschemneuro.5c00033
|
https://doi.org/10.1021/acschemneuro.5c00033
|
|
Microbiota-derived succinate promotes enterohaemorrhagic Escherichia coli virulence via lysine succinylation
|
Li, L..; Liu, Y.; Liu, D. et al.
|
Nat Microbiol 2025, 10, 749–764
|
https://doi.org/10.1038/s41564-025-01931-x
|
|
Molecular mechanisms of lung injury from ultra high and conventional dose rate pulsed radiation based on 4D DIA proteomics study
|
Li, M.; Zhang, L.; Gao, A. et al.
|
Sci Rep 2025, 15, 5425
|
https://doi.org/10.1038/s41598-025-87247-6
|
|
Separation and Characterization of Heterogeneity Among Various Sizes of Outer Membrane Vesicles Derived from the Probiotic Escherichia coli Nissle 1917
|
Li, N.; Xin, H.; Deng, K.
|
Membranes 2025, 15, 141
|
https://doi.org/10.3390/membranes15050141
|
|
Tanshinone IIA Suppresses the Proliferation of MGC803 Cells by Disrupting Glycolysis Under Anaerobic Conditions
|
Liu, Z.; Wang, Y.; Gao, X. et al.
|
Appl Biochem Biotechnol 2025
|
https://doi.org/10.1007/s12010-025-05205-4
|
|
The novel tRNA-derived fragment, tiRNA-Met, inhibits the malignant progression of triple-negative breast cancer by regulating RANBP3L via a targeted interaction with SNRPA
|
Lu, J.; Sun, Y.; Zhang, X. et al.
|
Cell Mol Biol Lett 2025, 30, 62
|
https://doi.org/10.1186/s11658-025-00738-2
|
|
Transcription Factors Fzc9 and Pdr802 Regulate ATP Levels and Metabolism in Cryptococcus neoformans
|
Ma, Y.; Xue, P.
|
IJMS 2025, 26, 1824
|
https://doi.org/10.3390/ijms26051824
|
|
Longitudinal proteomic analysis of pathophysiology in plasma and bronchoalveolar lavage fluid of patients with ARDS
|
Mitsuyama, Y.; Matsumoto, H.; Sugihara, F. et al.
|
j intensive care 2025, 13, 26
|
https://doi.org/10.1186/s40560-025-00793-z
|
|
Malaria exposure remodels the plasma proteome of Ghanaian children
|
Mohammed, A.M.; Olwal, C.O.; Fossati, A. et al.
|
BMC Infect Dis 2025, 25, 157
|
https://doi.org/10.1186/s12879-025-10495-4
|
|
Comparative Proteomic Analysis Reveals Altered Ciliary Proteins in Sickle Cell Disease
|
Mohieldin, A.M.; Spencer, M.; Bernal, C. et al.
|
J. Proteome Res. 2025, acs.jproteome.5c00168
|
https://doi.org/10.1021/acs.jproteome.5c00168
|
|
Insight into the function of the Golgi membrane protein GOLM1 in cholangiocytes through interactomic analysis
|
Nagaraj, M.; Emmagouni, S.K.G.; Chaurasiya, V. et al.
|
FEBS Letters 2025, 599, 1299–1316
|
https://doi.org/10.1002/1873-3468.70001
|
|
Histopathological and Proteomics Analysis of Shrimp Litopenaeus vannamei Infected with Ecytonucleospora hepatopenaei
|
Ni, P.; Ma, Y.; Shi, B. et al.
|
Microorganisms 2025, 13, 402
|
https://doi.org/10.3390/microorganisms13020402
|
|
Endothelial-mesenchymal crosstalk drives osteogenic differentiation of human osteoblasts through Notch signaling
|
Perepletchikova, D.; Kuchur, P.; Basovich, L. et al.
|
Cell Commun Signal 2025, 23, 100
|
https://doi.org/10.1186/s12964-025-02096-0
|
|
Gemcitabine Alters Phosphatidylcholine Metabolism in Mouse Pancreatic Tumors
|
Phulara, N.R.; Ishida, C.T.; Espenshade, P.J. et al.
|
J. Proteome Res. 2025, 24, 1209–1218
|
https://doi.org/10.1021/acs.jproteome.4c00839
|
|
Unveiling the role of sex in the metabolism of indoxyl sulfate and apixaban
|
Pina-Beltran, B.; Dimitrov, D.; McKay, N. et al.
|
Sci Rep 2025, 15, 6075
|
https://doi.org/10.1038/s41598-025-90405-5
|
|
Metabolic and Proteomic Divergence is Present in Spleens and Livers from Berkeley Sickle Cell Anemia and β-Thalassemia Mice
|
Rana, N.K.; Lisk, C.; Cendali, F. et al.
|
J. Proteome Res. 2025, 24, 1306–1316
|
https://doi.org/10.1021/acs.jproteome.4c00814
|
|
Plasma amino acids after human milk fortification and associations with growth in preterm infants
|
Rasmussen, M.B.; Holgersen, K.; Muk, T. et al.
|
Pediatr Res. 2025
|
https://doi.org/10.1038/s41390-025-04126-6
|
|
A primary cilia–autophagy axis in hippocampal neurons is essential to maintain cognitive resilience
|
Rivagorda, M.; Romeo-Guitart, D.; Blanchet, V. et al.
|
Nat Aging 2025, 5, 450–467
|
https://doi.org/10.1038/s43587-024-00791-0
|
|
Prevalence of conitive impairment in a population with atrial fibrillation and its relationship with arterial hypertension
|
Rivero, M.N.; Más, V.; Pereira, A. et al.
|
Journal of Hypertension 2025, 43, e100–e101
|
https://doi.org/10.1097/01.hjh.0001116172.94264.de
|
|
The liver proteome of individuals with a natural UGT2B17 complete deficiency
|
Rouleau, M.; Schwab, M.; Klein, K. et al.
|
Sci Rep 2025, 15, 5458
|
https://doi.org/10.1038/s41598-025-89160-4
|
|
The MAST kinase KIN-4 carries out mitotic entry functions of Greatwall in C
|
Roumbo, L.; Ossareh-Nazari, B.; Vigneron, S. et al.
|
elegans. 2025, EMBO J 44, 1943–1974
|
https://doi.org/10.1038/s44318-025-00364-w
|
|
USP5 stabilizes YTHDF1 to control cancer immune surveillance through mTORC1-mediated phosphorylation
|
Shao, N.; Xi, L.; Lv, Y. et al.
|
Nat Commun 2025, 16, 1313
|
https://doi.org/10.1038/s41467-025-56564-9
|
|
Temporal dynamics of the interstitial fluid proteome in human skeletal muscle following exhaustive exercise
|
Stocks, B.; Quesada, J.P.; Mozzicato, A.M. et al.
|
Sci. Adv. 2025, 11, eadp8608
|
https://doi.org/10.1126/sciadv.adp8608
|
|
Epitope Mapping with Sidewinder: An XL-MS and Structural Modeling Approach
|
Ströbaek, J.; Tang, D.; Gueto-Tettay, C. et al.
|
IJMS 2025, 26, 1488
|
https://doi.org/10.3390/ijms26041488
|
|
Quantitative chemoproteomics reveals dopamine’s protective modification of Tau
|
Wang, Q.; Liu, Z.; Wang, Y. et al.
|
Nat Chem Biol. 2025
|
https://doi.org/10.1038/s41589-025-01849-9
|
|
NRG4 suppresses breast cancer metastasis via ERBB4-YAP1-mediated down-regulation of MMPs
|
Wang, S.; Guo, M.; Xu, L. et al.
|
Genes & Diseases 2025, 101691
|
https://doi.org/10.1016/j.gendis.2025.101691
|
|
Semaglutide and adenosine alleviate obesity-induced kidney injury, with observed modulation of the Txnip/NLRP3 pathway
|
Wang, S.; Pan, X.; Liang, R. et al.
|
Diabetol Metab Syndr 2025, 17, 164
|
https://doi.org/10.1186/s13098-025-01736-2
|
|
Heat Shock Strengthens the Protective Potential of MSCs in Liver Injury by Promoting EV Release Through Upregulated Autophagosome Formation
|
Wang, T.; Gong, Y.; Lin, H. et al.
|
J of Extracellular Vesicle 2025, 14, e70084
|
https://doi.org/10.1002/jev2.70084
|
|
Integrative Spatial Proteomics and Single-Cell RNA Sequencing Unveil Molecular Complexity in Rheumatoid Arthritis for Novel Therapeutic Targeting
|
Wang, X.; Wang, F.; Iyer, A.S. et al.
|
Proteomes 2025, 13, 17
|
https://doi.org/10.3390/proteomes13020017
|
|
Proteomics analysis revealed the activation and suppression of different host defense components challenged with mango leaf spot pathogen Alternaria alternata
|
Xie, X.; Yang, Z.; Li, D. et al.
|
BMC Plant Biol 2025, 25, 227
|
https://doi.org/10.1186/s12870-025-06250-1
|
|
Methylcobalamin protects against liver failure via engaging gasdermin E
|
Xu, W.; Wang, Y.; Cui, S. et al.
|
Nat Commun 2025, 16, 1233
|
https://doi.org/10.1038/s41467-024-54826-6
|
|
Structural insights into dynamics of the BMV TLS aminoacylation
|
Yang, W.; Yi, R.; Yao, J. et al.
|
Nat Commun 2025, 16, 1276
|
https://doi.org/10.1038/s41467-025-56612-4
|
|
Astaxanthin promotes in vitro maturation of mouse oocytes by regulating mitochondrial functions and protein homeostasis
|
Yuan, X.; Zhong, W.; Zhang, C. et al.
|
Biology of Reproduction ioaf107 2025
|
https://doi.org/10.1093/biolre/ioaf107
|
|
Proteomics and succinylation modification characterization in clear cell renal cell carcinoma
|
Yue, D.; Zheng, M.
|
Discov Onc 2025, 16, 835
|
https://doi.org/10.1007/s12672-025-02737-3
|
|
The impact of LDL cholesterol levels on the severity of depression in patients with essential hypertension
|
Yusupova, K.; Abdullaeva, G.; Khamidullaeva, G.
|
Journal of Hypertension 2025, 43, e100
|
https://doi.org/10.1097/01.hjh.0001116164.36066.d1
|
|
Proteomic and metabolomic profiling reveals the underlying molecular mechanisms in modified alternate-day fasting-mediated protection against Diabetic kidney disease
|
Zeng, X.; Xing, Y.; Ma, X. et al.
|
PLoS ONE 2025, 20, e0319053
|
https://doi.org/10.1371/journal.pone.0319053
|
|
Differential expression of lysine-acetylated proteins in the anti-inflammatory effects of luteolin-gadolinium on macrophages
|
Zhang, H.; Tian, H.; Yu, Y. et al.
|
Biochemical and Biophysical Research Communications 2025, 773, 152072
|
https://doi.org/10.1016/j.bbrc.2025.152072
|
|
A comprehensive view of the molecular features within the serum and serum EV of Alzheimer’s disease
|
Zhang, J.; Cheng, X.; Hu, A. et al.
|
Analyst 2025, 150, 922–935
|
https://doi.org/10.1039/D4AN01018C
|
|
Proteomic profiling reveals biological processes and biomarkers involved in the pathogenesis of occult breast cancer
|
Zhang, J.; Wang, Y.; Liu, Y. et al.
|
BMC Cancer 2025, 25, 231
|
https://doi.org/10.1186/s12885-025-13657-4
|
|
In-Depth Proteomic Analysis of Tissue Interstitial Fluid Reveals Biomarker Candidates Related to Varying Differentiation Statuses in Gastric Adenocarcinoma
|
Zhang, J.; Xiong, A.; Yang, Y. et al.
|
J. Proteome Res. 2025, 24, 1386–1401
|
https://doi.org/10.1021/acs.jproteome.4c01067
|
|
Nicotinamide Phosphoribosyltransferase Acetylation Mediating Muscle Dysfunction Contributes to Sleep Apnoea in Obesity
|
Zhang, L.; Yan, Y.R.; Li, S.Q. et al.
|
J cachexia sarcopenia muscle 2025, 16, e13693
|
https://doi.org/10.1002/jcsm.13693
|
|
Single-cell proteomics analysis of human oocytes during GV-to-MI transition
|
Zhang, Z., Luo, L.; Fan, S. et al.
|
Human Reproduction 2025, deaf086
|
https://doi.org/10.1093/humrep/deaf086
|
|
Cucurbitacin IIa Alleviates Colitis via Promoting the Release of Host-Derived Extracellular Vesicles Encapsulating microRNA-30b-5p
|
Zhao, Y.; Jiang, B.; Zuo, S.
|
JIR Volume 2025, 18, 1447–1458
|
https://doi.org/10.2147/JIR.S500722
|
|
Proteomic Profiling of Serum-Derived Extracellular Vesicles in Diffuse Idiopathic Skeletal Hyperostosis Patients
|
Zhou, H.; Gong, J.; Zhang, Z. et al.
|
J. Proteome Res. 2025, acs.jproteome.4c01015
|
https://doi.org/10.1021/acs.jproteome.4c01015
|
|
A multi-omics spatial framework for host-microbiome dissection within the intestinal tissue microenvironment
|
Zhu, B.; Bai, Y.; Yeo, Y.Y. et al.
|
Nat Commun 2025, 16, 1230
|
https://doi.org/10.1038/s41467-025-56237-7
|
|
Enhanced viability and functional maturity of iPSC-derived islet organoids by collagen-VI-enriched ECM scaffolds
|
Zhu, D.; Chen, Z.; Guo, K. et al.
|
Cell Stem Cell 2025, 32, 547-563.e7
|
https://doi.org/10.1016/j.stem.2025.02.001
|
|
CPT1A-mediated MFF succinylation promotes stemness maintenance in ovarian cancer stem cells
|
Zhu, Y.; Chen, S.; Su, H. et al.
|
Commun Biol 2025, 8, 250
|
https://doi.org/10.1038/s42003-025-07720-w
|
|
Single Cell Proteomics Reveals Specific Cellular Subtypes in Cardiomyocytes Derived from Human iPSCs and Adult Hearts
|
Ai, L.; Binek, A.; Zhemkov, V. et al.
|
Molecular & Cellular Proteomics 2025, 100910
|
https://doi.org/10.1016/j.mcpro.2025.100910
|
|
Robust proteome profiling of cysteine-reactive fragments using label-free chemoproteomics
|
Biggs, G.S.; Cawood, E.E.; Vuorinen, A. et al.
|
Nat Commun 2025, 16, 73
|
https://doi.org/10.1038/s41467-024-55057-5
|
|
Colon mucosal proteomics of ankylosing spondylitis versus gut inflammation
|
Cheng, M.; Xiao, S.; Kayi, S. et al.
|
PLoS ONE 19 2024, e0315324
|
https://doi.org/10.1371/journal.pone.0315324
|
|
Selective HLA Class II Allele-Restricted Activation of Atabecestat Metabolite-Specific Human T-Cells
|
Ford, M.; Thomson, P.J.; Snoeys, J. et al.
|
Chem. Res. 2024, Toxicol. acs.chemrestox.4c00262
|
https://doi.org/10.1021/acs.chemrestox.4c00262
|
|
Increasing taxonomic and functional characterization of host-microbiome interactions by DIA-PASEF metaproteomics
|
Gómez-Varela, D.; Xian, F.; Grundtner, S. et al.
|
Front. Microbiol. 2023, 14, 1258703
|
https://doi.org/10.3389/fmicb.2023.1258703
|
|
Tracing active members in microbial communities by BONCAT and click chemistry-based enrichment of newly synthesized proteins
|
Hellwig, P.; Kautzner, D.; Heyer, R. et al.
|
ISME Communications 2024, 4, ycae153
|
https://doi.org/10.1093/ismeco/ycae153
|
|
Development and Validation of RoboCap, a Robotic Capillary Platform to Automate Capillary Electrophoresis Mass Spectrometry En Route to High-Throughput Single-Cell Proteomics
|
Jia, D.; Nemes, P.
|
Anal. Chem. 2024, 96, 16985–16993
|
https://doi.org/10.1021/acs.analchem.4c04353
|
|
Spatial characterization and stratification of colorectal adenomas by deep visual proteomics
|
Kabatnik, S.; Post, F.; Drici, L. et al.
|
iScience 2024, 27, 110620
|
https://doi.org/10.1016/j.isci.2024.110620
|
|
Heterogeneity Assessment and Protein Pathway Prediction via Spatial Lipidomic and Proteomic Correlation: Advancing Dry Proteomics concept for Human Glioblastoma Prognosis
|
Lagache, L.; Zirem, Y.; Le Rhun, É. et al.
|
Molecular & Cellular Proteomics 2024, 100891
|
https://doi.org/10.1016/j.mcpro.2024.100891
|
|
Spatial proteomics identifies JAKi as treatment for a lethal skin disease
|
Nordmann, T.M.; Anderton, H.; Hasegawa, A. et al.
|
Nature 2024
|
https://doi.org/10.1038/s41586-024-08061-0
|
|
Gradient-Elution Nanoflow Liquid Chromatography Without a Binary Pump: Smoothed Step Gradients Enable Reproducible, Sensitive, and Low-Cost Separations for Single-Cell Proteomics
|
Webber, K.G.I.; Huang, S.; Lin, H.-J.L. et al.
|
Molecular & Cellular Proteomics 2024, 23, 100880
|
https://doi.org/10.1016/j.mcpro.2024.100880
|
|
Proteomic study of secretomes from cellular agriculture for milk production
|
Che, J.; Nielsen, S.D.-H.; Sattari, Z. et al.
|
preprint; Research Square 2024
|
https://doi.org/10.21203/rs.3.rs-3990568/v1
|
|
Combining Data Independent Acquisition with Spike-in SILAC (DIA-SiS) Improves Proteome Coverage and Quantification
|
Welter, A. S.; Gerwien, M.; Kerridge, R. et al.
|
Molecular & Cellular Proteomics 100839. 2024
|
https://doi.org/10.1016/j.mcpro.2024.100839
|
|
Pick-up single-cell proteomic analysis for quantifying up to 3000 proteins in a Mammalian cell
|
Wang, Y.; Guan, Z.-Y.; Shi, S.-W. et al.
|
Nat Commun 15, 1279. 2024
|
https://doi.org/10.1038/s41467-024-45659-4
|
|
Evaluation of Protein Identification and Quantification by the diaPASEF Method on timsTOF SCP
|
Wang, J.; Tan, H.; Fu, Y. et al.
|
J. Am. Soc. Mass Spectrom. jasms.4c00067
|
https://doi.org/10.1021/jasms.4c00067
|
|
IMBAS-MS Discovers Organ-Specific HLA Peptide Patterns in Plasma
|
Wahle, M.; Thielert, M.; Mann, M. et al.
|
Molecular & Cellular Proteomics 23, 100689. 2024
|
https://doi.org/10.1016/j.mcpro.2023.100689
|
|
Parallel accumulation‐serial fragmentation method for in‐depth proteomic analysis of bronchoalveolar lavage fluid collected from patients with nonsmall cell lung cancer
|
Vu, H. M.; Huh, S.; Lee, J. H. et al.
|
Proteomics Clinical Apps 2300053. 2024
|
https://doi.org/10.1002/prca.202300053
|
|
timsTOF HT Improves Protein Identification and Quantitative Reproducibility for Deep Unbiased Plasma Protein Biomarker Discovery
|
Vitko, D.; Chou, W.-F.; Nouri Golmaei, S. et al.
|
Proteome Res. acs.jproteome.3c00646. 2024
|
https://doi.org/10.1021/acs.jproteome.3c00646
|
|
Cerebrospinal fluid shotgun proteomics identifies distinct proteomic patterns in cerebral amyloid angiopathy rodent models and human patients
|
Vervuurt, M.; Schrader, J. M.; Wessels, H. J. C. T. et al.
|
Acta Neuropathologica Communications 12,6
|
https://doi.org/10.1186/s40478-023-01698-4
|
|
What’s new in single-cell proteomics
|
Truong, T.; Kelly, R.T. et al.
|
Current Opinion in Biotechnology 86, 103077. 2024
|
https://doi.org/10.1016/j.copbio.2024.103077
|
|
Transporter Protein Expression of Corneal Epithelium in Rabbit and Porcine: Evaluation of Models for Ocular Drug Transport Study
|
Ramsay, E.; Montaser, A. B.; Niitsu, K. et al.
|
Mol. Pharmaceutics 21, 3204–3217. 2024
|
https://doi.org/10.1021/acs.molpharmaceut.3c01210
|
|
Optimizing differential expression analysis for proteomics data via high-performing rules and ensemble inference
|
Peng, H.; Wang, H.; Kong, W. et al.
|
Nat Commun 15, 3922. 2024
|
https://doi.org/10.1038/s41467-024-47899-w
|
|
µPhos: a scalable and sensitive platform for high-dimensional phosphoproteomics
|
Oliinyk, D.; Will, A.; Schneidmadel, F. R. et al.
|
Mol Syst Biol. 2024
|
https://doi.org/10.1038/s44320-024-00050-9
|
|
The social and structural architecture of the yeast protein interactome
|
Michaelis, A. C.; Brunner, A.-D.; Mann, M. et al.
|
Nature 624, 192–200. 2023
|
https://doi.org/10.1038/s41586-023-06739-5
|
|
Neat plasma proteomics: getting the best out of the worst
|
Metatla, I.; Roger, K.; Guerrera, I. C. et al.
|
Clin Proteom 21, 22. 2024
|
https://doi.org/10.1186/s12014-024-09477-6
|
|
An Automated and Fast Sample Preparation Workflow for Laser Microdissection Guided Ultrasensitive Proteomics
|
Makhmut, A.; Qin, D.; Coscia, F. et al.
|
Molecular & Cellular Proteomics 23, 100750. 2024
|
https://doi.org/10.1016/j.mcpro.2024.100750
|
|
Acquisition and Analysis of DIA-Based Proteomic Data: A Comprehensive Survey in 2023
|
Lou, R.; Shui, W.
|
Molecular & Cellular Proteomics 23, 100712. 2024
|
https://doi.org/10.1016/j.mcpro.2024.100712
|
|
Proteomic predictors of individualized nutrient-specific insulin secretion in health and disease
|
Kolic, J.; Sun, W. G.; Foster, L. J. et al.
|
Cell Metabolism 36, 1619-1633.e5. 2024
|
https://doi.org/10.1016/j.cmet.2024.06.001
|
|
The Future of Proteomics is Up in the Air: Can Ion Mobility Replace Liquid Chromatography for High Throughput Proteomics?
|
Jiang, Y.; DeBord, D.; Van Eyk, J. E. et al.
|
Proteome Res. acs.jproteome.4c00248. 2024
|
https://doi.org/10.1021/acs.jproteome.4c00248
|
|
Thunder-DDA-PASEF enables high-coverage immunopeptidomics and is boosted by MS2Rescore with MS2PIP timsTOF fragmentation prediction model
|
Carapito, C.; Martens, L.; Tenzer, S. et al.
|
Nat Commun 15, 2288. 2024
|
https://doi.org/10.1038/s41467-024-46380-y
|
|
Bottom-up Histone Post-translational Modification Analysis using Liquid Chromatography, Trapped Ion Mobility Spectrometry, and Tandem Mass Spectrometry
|
Fuller, C. N.; Valadares Tose, L.; Vitorino, F. N. L. et al.
|
J. Proteome Res. acs.jproteome.4c00177. 2024
|
https://doi.org/10.1021/acs.jproteome.4c00177
|
|
Protein-Centric Analysis of Personalized Antibody Repertoires Using LC-MS-Based Fab-Profiling on a timsTOF
|
Fiala, J.; Schuster, D.; Heck, A. J. R. et al.
|
J. Am. Soc. Mass Spectrom. jasms.4c00076. 2024
|
https://doi.org/10.1021/jasms.4c00076
|
|
Database selection for shotgun metaproteomic of low-diversity dairy microbiomes
|
Da Silva Duarte, V.; De Paula Dias Moreira, L.; Skeie, S. B. et al.
|
International Journal of Food Microbiology 110706. 2024
|
https://doi.org/10.1016/j.ijfoodmicro.2024.110706
|
|
Top‐down ion mobility/mass spectrometry reveals enzyme specificity: Separation and sequencing of isomeric proteoforms
|
Berthias, F.; Bilgin, N.; Jensen, O. N. et al.
|
2024. Proteomics 2200471
|
https://doi.org/10.1002/pmic.202200471
|
|
Maximizing Glycoproteomics Results through an Integrated Parallel Accumulation Serial Fragmentation Workflow
|
Baerenfaenger, M.; Post, M. A.; Wessels, H. J. C. T. et al.
|
Anal. Chem. 2024, 96, 8956–8964.
|
https://doi.org/10.1021/acs.analchem.3c05874
|
|
Automated Single-Cell Proteomics Providing Sufficient Proteome Depth to Study Complex Biology beyond Cell Type Classifications
|
Ctortecka, C.; Clark, N. M. et al.
|
preprint; Biochemistry, 2024
|
https://doi.org/10.1101/2024.01.20.576369
|
|
What Do the Proteins Say about Maternal-Fetal Communication in Buffaloes?
|
Codognoto, V. M.; de Souza, F. F. et al.
|
Journal of Proteomics 2024, 290, 105023
|
https://doi.org/10.1016/j.jprot.2023.105023
|
|
Integrative Metabolomics and Proteomics Allow the Global Intracellular Characterization of Bacillus Subtilis Cells and Spores
|
Huang, Y.; Swarge, B. N. et al.
|
J. Proteome Res. 2024, acs.jproteome.3c00386
|
https://doi.org/10.1021/acs.jproteome.3c00386
|
|
Enhanced Feature Matching in Single-Cell Proteomics Characterizes Response to IFN-γ and Reveals Co-Existence of Different Cell States
|
Krull, K. K.; Ali, S. A.; Krijgsveld, J.
|
preprint; Systems Biology, 2024
|
https://doi.org/10.1101/2024.01.10.575010
|
|
Single Cell Proteomics by Mass Spectrometry Reveals Deep Epigenetic Insight and New Targets of a Class Specific Histone Deacetylase Inhibitor
|
Orsburn, B. C.
|
preprint; Biochemistry, 2024
|
https://doi.org/10.1101/2024.01.05.574437
|
|
Impact of infection on proteome-wide glycosylation revealed by distinct signatures for bacterial and viral pathogens
|
Wessels, H. J. C. T.; van Gool, A. J.; Willems, E. et al.
|
iScience 26, 107257. 2023
|
https://doi.org/10.1016/j.isci.2023.107257
|
|
Interactive Effects of Dietary Isoleucine and Valine Ratios to Lysine in Response to Varying Leucine to Lysine Ratios on Pectoralis Major Muscle Protein Expression in Commercial Broilers
|
Almendares, C. I.; Ventura, D. E. et al.
|
Journal of Animal Science 2023, 101 (Supplement_3), 195–196
|
https://doi.org/10.1093/jas/skad281.237
|
|
A Framework for Ultra-Low-Input Spatial Tissue Proteomics
|
Makhmut, A.; Qin, D. et al.
|
Cell Systems 2023, S2405471223002879
|
https://doi.org/10.1016/j.cels.2023.10.003
|
|
A Region‐resolved Proteomic Map of the Human Brain Enabled by High‐throughput Proteomics
|
Tüshaus, J.; Sakhteman, A.; Kuster, B. et al.
|
The EMBO Journal 2023, e114665
|
https://doi.org/10.15252/embj.2023114665
|
|
Archaeal GPN-Loop GTPases Involve a Lock-Switch-Rock Mechanism for GTP Hydrolysis
|
Korf, L.; Ye, X. et al.
|
mBio 2023, e00859-23
|
https://doi.org/10.1128/mbio.00859-23
|
|
Community-Based Peptidomic Clustering Reveals Pathogen-Specific Proteolytic Signatures in Wounds
|
Hartman, E.; Forsberg, F.; Malmström, J. et al.
|
preprint; Bioinformatics, 2023
|
https://doi.org/10.1101/2023.12.28.573527
|
|
Deep Proteomics Reveals Incorporation of Unedited Proteins into Mitochondrial Protein Complexes in Arabidopsis
|
Rugen, N.; Senkler, M. et al.
|
Plant Physiology 2023, kiad655
|
https://doi.org/10.1093/plphys/kiad655
|
|
Deep Topographic Proteomics of a Human Brain Tumour
|
Davis, S.; Scott, C. et al.
|
Nat Commun 2023, 14 (1), 7710
|
https://doi.org/10.1038/s41467-023-43520-8
|
|
Distinct Molecular Profiles of Skull Bone Marrow in Health and Neurological Disorders
|
Kolabas, Z. I.; Kuemmerle, L. B. et al.
|
Cell 2023, 186 (17), 3706-3725.e29
|
https://doi.org/10.1016/j.cell.2023.07.009
|
|
Disturbed Electron Transport beyond PSI Changes Metabolome and Transcriptome in Zn-Deficient Soybean
|
Andresen, E.; Morina, F. et al.
|
Biochimica et Biophysica Acta (BBA) - Bioenergetics 2023, 149018
|
https://doi.org/10.1016/j.bbabio.2023.149018
|
|
DSE Inhibits Melanoma Progression by Regulating Tumor Immune Cell Infiltration and VCAN
|
Xia, L.; Feng, M. et al.
|
Cell Death Discov. 2023, 9 (1), 373
|
https://doi.org/10.1038/s41420-023-01676-8
|
|
Effects of Polyphosphate Metabolism Mutations on Biofilm, Capsule Formation and Virulence Traits in Hypervirulent ST23 Klebsiella Pneumoniae SGH10
|
Rojas, D.; Marcoleta, A. E. et al.
|
preprint; Microbiology, 2023
|
https://doi.org/10.1101/2023.09.15.557991
|
|
Endogenous HLA-A*02:01 Restricted Antigen Derived from H3.3K27M Is Insufficient for Effective Immune-Targeting of Diffuse Midline Glioma
|
Wang, S. S.; Pandey, K.; Purcell, A. W. et al.
|
Molecular Therapy - Oncolytics 2023, S237277052300058X
|
https://doi.org/10.1016/j.omto.2023.08.005
|
|
Expanding the MAPPs Assay to Accommodate MHC-II Pan Receptors for Improved Predictability of Potential T Cell Epitopes
|
Hartman, K.; Steiner, G. et al.
|
Biology 2023, 12 (9), 1265
|
https://doi.org/10.3390/biology12091265
|
|
Exploiting Ion‐mobility Mass Spectrometry for Unraveling Proteome Complexity
|
Perchepied, S.; Zhou, Z. et al.
|
J of Separation Science 2023, 46 (18), 2300512
|
https://doi.org/10.1002/jssc.202300512
|
|
Fast Proteomics with dia-PASEF and Analytical Flow-Rate Chromatography
|
Szyrwiel, L.; Gille, C. et al.
|
Proteomics 2023, 2300100
|
https://doi.org/10.1002/pmic.202300100
|
|
Functional Characterization of a Lytic Polysaccharide Monooxygenase from Schizophyllum Commune That Degrades Non-Crystalline Substrates
|
Østby, H.; Christensen, I. A. et al.
|
Sci Rep 2023, 13 (1), 17373
|
https://doi.org/10.1038/s41598-023-44278-1
|
|
Global Lactylome Reveals Lactylation-Dependent Mechanisms Underlying TH 17 Differentiation in Experimental Autoimmune Uveitis
|
Fan, W.; Wang, X. et al.
|
Sci. Adv. 2023, 9 (42), eadh4655
|
https://doi.org/10.1126/sciadv.adh4655
|
|
High-Throughput Single-Cell Proteomic Analysis of Organ-Derived Heterogeneous Cell Populations by Nanoflow Dual-Trap Single-Column Liquid Chromatography
|
Kreimer, S.; Binek, A.; Van Eyk, J. et al.
|
Anal. Chem. 2023, 95 (24), 9145–9150
|
https://doi.org/10.1021/acs.analchem.3c00213
|
|
Human Visceral Adipose Tissue Microvascular Endothelial Cell Isolation and Establishment of Co-Culture with White Adipocytes to Analyze Cell-Cell Communication
|
Chaurasiya, V.; Pham, D. D. et al.
|
Experimental Cell Research 2023, 113819
|
https://doi.org/10.1016/j.yexcr.2023.113819
|
|
In Vivo Protein Turnover Rates in Varying Oxygen Tensions Nominate MYBBP1A as a Mediator of the Hyperoxia Response
|
Chen, X.; Haribowo, A. G. et al.
|
Sci. Adv. 2023, 9 (49), eadj4884
|
https://doi.org/10.1126/sciadv.adj4884
|
|
Insight into Ionic Strength-Induced Solubilization of Myofibrillar Proteins from Silver Carp ( Hypophthalmichthys Molitrix ): Structural Changes and 4D Label-Free Proteomics Analysis
|
Li, X.; Zhang, N. et al.
|
J. Agric. Food Chem. 2023, acs.jafc.3c04254
|
https://doi.org/10.1021/acs.jafc.3c04254
|
|
Integrated Proteome and Malonylome Analyses Reveal the Potential Meaning of TLN1 and ACTB in End-Stage Renal Disease
|
Tan, R.; Li, D. et al.
|
Proteome Sci 2023, 21 (1), 18
|
https://doi.org/10.1186/s12953-023-00211-y
|
|
Ionmob: A Python Package for Prediction of Peptide Collisional Cross-Section Values
|
Teschner, D.; Martens, L.; Tenzer, S. et al.
|
Bioinformatics 2023, btad486
|
https://doi.org/10.1093/bioinformatics/btad486
|
|
M-Protein Diagnostics in Multiple Myeloma Patients Using Ultra-Sensitive Targeted Mass Spectrometry and an off-the-Shelf Calibrator
|
Wijnands, C.; Langerhorst, P.; van Gool, A. J. et al.
|
Clinical Chemistry and Laboratory Medicine (CCLM) 2023, 0 (0)
|
https://doi.org/10.1515/cclm-2023-0781
|
|
Metabolic Disruption Impairs Ribosomal Protein Levels, Resulting in Enhanced Aminoglycoside Tolerance
|
Orman, M.A.; Shiraliyev, R.
|
preprint; Microbiology, 2023
|
https://doi.org/10.1101/2023.12.20.572673
|
|
Microanalytical Mass Spectrometry with Super-Resolution Microscopy Reveals a Proteome Transition During Development of the Brain’s Circadian Pacemaker
|
Choi, S. B.; Vatan, T. et al.
|
Anal. Chem. 2023, acs.analchem.3c01987
|
https://doi.org/10.1021/acs.analchem.3c01987
|
|
Multi-omic Analysis of Guided and Unguided Forebrain Organoids Reveal Differences in Cellular Composition and Metabolic Profiles
|
Øhlenschlæger, M. S.; Jensen, P. et al.
|
preprint; Neuroscience, 2023
|
https://doi.org/10.1101/2023.12.21.572871
|
|
Multi omics based Analysis of the Regulatory Mechanism of Gypenosides on Bile Acids in Hypercholesterolemic Mice
|
Feng, C.; Yang, Y. et al.
|
Exp Ther Med 2023, 26 (3), 438
|
https://doi.org/10.3892/etm.2023.12136
|
|
Multicenter Collaborative Study to Optimize Mass Spectrometry Workflows of Clinical Specimens
|
Kardell, O.; Von Toerne, C.; Mann, M. et al.
|
J. Proteome Res. 2023, acs.jproteome.3c00473
|
https://doi.org/10.1021/acs.jproteome.3c00473
|
|
DDA-PASEF and DiaPASEF Acquired Cell Line Proteomic Datasets with Deliberate Batch Effects
|
Wang, H.; Lim, K. P. et al.
|
MultiPro: Sci Data 2023, 10 (1), 858
|
https://doi.org/10.1038/s41597-023-02779-8
|
|
Nitroxoline Resistance Is Associated with Significant Fitness Loss and Diminishes in Vivo Virulence of Escherichia Coli
|
Deschner, F.; Risch, T. et al.
|
Microbiol Spectr 2023, e03079-23
|
https://doi.org/10.1128/spectrum.03079-23
|
|
Plasma Glycoproteomics Delivers High-Specificity Disease Biomarkers by Detecting Site-Specific Glycosylation Abnormalities
|
Wessels, H. J. C. T.; Kulkarni, P.; van Gool, A. J. et al.
|
Journal of Advanced Research 2023, S2090123223002394
|
https://doi.org/10.1016/j.jare.2023.09.002
|
|
Potential Bioactive Peptides Obtained after in Vitro Gastrointestinal Digestion of Wine Lees from Sequential Fermentations
|
de Paula Dias Moreira, L.; Corich, V. et al.
|
Food Research International 2023, 113833
|
https://doi.org/10.1016/j.foodres.2023.113833
|
|
Propranolol Reduces the Accumulation of Cytotoxic Aggregates in C9orf72-ALS/FTD in Vitro Models
|
Seidel, M.; Rajkumar, S. et al.
|
Current Research in Neurobiology 2023, 5, 100105
|
https://doi.org/10.1016/j.crneur.2023.100105
|
|
Proteomic Profiling of Advanced Melanoma Patients to Predict Therapeutic Response to Anti-PD-1 Therapy
|
Zila, N.; Eichhoff, O. M.; Aebersold, R. et al.
|
Clinical Cancer Research 2023
|
https://doi.org/10.1158/1078-0432.CCR-23-0562
|
|
Quantification of 782 Plasma Peptides by Multiplexed Targeted Proteomics
|
Lesur, A.; Bernardin, F. et al.
|
J. Proteome Res. 2023, 22 (6), 1630–1638
|
https://doi.org/10.1021/acs.jproteome.2c00575
|
|
Quantifying the Impact of the Peptide Identification Framework on the Results of Fast Photochemical Oxidation of Protein Analysis
|
Zakopcanik, M.; Kavan, D. et al.
|
J. Proteome Res. 2023, acs.jproteome.3c00390
|
https://doi.org/10.1021/acs.jproteome.3c00390
|
|
Robust Dimethyl‐based Multiplex‐DIA Doubles Single‐cell Proteome Depth via a Reference Channel
|
Thielert, M.; Itang, E. C.; Mann, M. et al.
|
Molecular Systems Biology 2023, e11503
|
https://doi.org/10.15252/msb.202211503
|
|
Spatial Single-Cell Mass Spectrometry Defines Zonation of the Hepatocyte Proteome
|
Rosenberger, F. A.; Thielert, M.; Mann, M. et al.
|
Nat Methods 2023
|
https://doi.org/10.1038/s41592-023-02007-6
|
|
Structure and Dynamics of Endogenous Cardiac Troponin Complex in Human Heart Tissue Captured by Native Nanoproteomics
|
Chapman, E. A.; Roberts, D. S.; Ge, Y. et al.
|
Nat Commun 2023, 14 (1), 8400
|
https://doi.org/10.1038/s41467-023-43321-z
|
|
STT3A-Mediated Viral N-Glycosylation Underlies the Tumor Selectivity of Oncolytic Virus M1
|
Song, D.; Jia, X. et al.
|
Oncogene 2023
|
https://doi.org/10.1038/s41388-023-02872-7
|
|
The Bone–Liver Interaction Modulates Immune and Hematopoietic Function through Pinch-Cxcl12-Mbl2 Pathway
|
He, T.; Zhou, B. et al.
|
Cell Death Differ 2023
|
https://doi.org/10.1038/s41418-023-01243-9
|
|
Time-Sequential Fibroblast-to-Myofibroblast Transition in Elastin-Variable 3D Hydrogel Environments by Collagen Networks
|
Do, N. T.; Lee, S. Y. et al.
|
Biomater Res 2023, 27 (1), 103
|
https://doi.org/10.1186/s40824-023-00439-x
|
|
TOFIMS Mass Spectrometry-Based Immunopeptidomics Refines Tumor Antigen Identification
|
Hoenisch Gravel, N.; Nelde, A. et al.
|
Nat Commun 2023, 14 (1), 7472
|
https://doi.org/10.1038/s41467-023-42692-7
|
|
Top-Down Protein Analysis by Tandem-Trapped Ion Mobility Spectrometry/Mass Spectrometry (Tandem-TIMS/MS) Coupled with Ultraviolet Photodissociation (UVPD) and Parallel Accumulation/Serial Fragmentation (PASEF) MS/MS Analysis
|
Liu, F. C.; Ridgeway, M. E. et al.
|
J. Am. Soc. Mass Spectrom. 2023, jasms.3c00187
|
https://doi.org/10.1021/jasms.3c00187
|
|
Ultra-High-Throughput Mapping of the Chemical Space of Asymmetric Catalysis Enables Accelerated Reaction Discovery
|
Nie, W.; Wan, Q. et al.
|
Nat Commun 2023, 14 (1), 6671
|
https://doi.org/10.1038/s41467-023-42446-5
|
|
Oxonium Ion–Guided Optimization of Ion Mobility–Assisted Glycoproteomics on the timsTOF Pro
|
Mukherjee, S.; Jankevics, A. et al.
|
Molecular & Cellular Proteomics 2023, 22 (2), 100486
|
https://doi.org/10.1016/j.mcpro.2022.100486
|
|
Linkage-Specific Identification and Quantification of Sialylated Glycans by TIMS-TOF MS through Conjugation with Metal Complexes
|
Li, Y.; Wang, H. et al.
|
Talanta 2023, 253, 123995
|
https://doi.org/10.1016/j.talanta.2022.123995
|
|
Glycoproteomic Analyses of Influenza A Viruses Using TimsTOF Pro MS
|
Wong, T. L.; Mooney, B. P. et al.
|
Proteome Res. 2023, 22 (1), 62–77
|
https://doi.org/10.1021/acs.jproteome.2c00469
|
|
Benchmarking Commonly Used Software Suites and Analysis Workflows for DIA Proteomics and Phosphoproteomics
|
Lou, R.; Cao, Y. et al.
|
Nat Commun 2023, 14 (1), 94
|
https://doi.org/10.1038/s41467-022-35740-1
|
|
Multi-Omics Based Anti-Inflammatory Immune Signature Characterizes Long COVID-19 Syndrome
|
Kovarik, J. J.; Bileck, A. et al.
|
iScience 2023, 26 (1), 105717
|
https://doi.org/10.1016/j.isci.2022.105717
|
|
Increasing the Throughput of Sensitive Proteomics by PlexDIA
|
Derks, J.; Leduc, A. et al.
|
Nat Biotechnol 2023, 41 (1), 50–59
|
https://doi.org/10.1038/s41587-022-01389-w
|
|
A Combined Lipidomic and Proteomic Profiling of Arabidopsis Thaliana Plasma Membrane
|
Bahammou, D.; Recorbet, G. et al.
|
preprint; Plant Biology, 2023
|
https://doi.org/10.1101/2023.05.14.540643
|
|
A Label-Free Approach for Relative Spatial Quantitation of c-Di-GMP in Microbial Biofilms
|
McCaughey, C.; Trebino, M. et al.
|
preprint; Microbiology, 2023
|
https://doi.org/10.1101/2023.10.10.561783
|
|
A Protein Blueprint of the Diatom CO2 -Fixing Organelle
|
Nam, O.; McKenzie, C. et al
|
preprint; Cell Biology, 2023
|
https://doi.org/10.1101/2023.10.26.564148
|
|
A Single-Sample Workflow for Joint Metabolomic and Proteomic Analysis of Clinical Specimens
|
Gegner, H.; Naake, T. et al.
|
preprint; Cancer Biology, 2023
|
https://doi.org/10.1101/2023.11.07.561857
|
|
Acetic Acid Is a Superior Acidifier for Sub-Nanogram and Single Cell Proteomic Studies
|
Orsburn, B. C.
|
preprint; Biochemistry, 2023
|
https://doi.org/10.1101/2023.08.01.551522
|
|
Age-Associated Aberrations of Cumulus-Oocyte Interaction and Microfilamentous Structure in the Zona Pellucida Decline Female Fertility
|
Ishikawa-Yamauchi, Y.; Emori, C. et al.
|
preprint; Developmental Biology, 2023
|
https://doi.org/10.1101/2023.12.30.573680
|
|
ATR Promotes MTORC1 Activation via de Novo Cholesterol Synthesis in P16-Low Cancer Cells
|
Tangudu, N. K.; Huang, Z. et al.
|
preprint; Cancer Biology, 2023
|
https://doi.org/10.1101/2023.10.27.564195
|
|
BioE3 Enables the Identification of Bona Fide Targets of E3 Ligases
|
Barroso-Gomila, O.; Merino-Cacho, L. et al.
|
preprint; Cell Biology, 2023
|
https://doi.org/10.1101/2023.08.18.553883
|
|
Biological and Genetic Determinants of Red Blood Cell Glycolysis
|
Nemkov, T.; Stephenson, D. et al.
|
preprint; Biochemistry, 2023
|
https://doi.org/10.1101/2023.09.11.557250
|
|
Borrowing Transcriptional Kinases to Activate Apoptosis
|
Sarott, R.; Gourisankar, S. et al.
|
preprint; Cancer Biology, 2023
|
https://doi.org/10.1101/2023.10.23.563687
|
|
Caspase-2 Protects against Ferroptotic Cell Death
|
Dawar, S.; Benitez, M. C. et al.
|
preprint; Cancer Biology, 2023
|
https://doi.org/10.1101/2023.08.22.553791
|
|
Characterisation of the Butyrate Production Pathway in Probiotic MIYAIRI588 by a Combined Whole Genome-Proteome Approach
|
Wood, L.; Omorotionmwan, B. B. et al.
|
preprint; Microbiology, 2023
|
https://doi.org/10.1101/2023.08.20.554021
|
|
Comparative Omics Reveals Unanticipated Metabolic Rearrangements in a High-Oil Mutant of Plastid Acetyl-CoA Carboxylase
|
Kataya, A.; Da Silva Nascimento, J. R. et al.
|
preprint; Plant Biology, 2023
|
https://doi.org/10.1101/2023.08.31.555777
|
|
Comprehensive Multi-Omic Analysis Reveals Distinct Molecular Features in Early and Advanced Stages of Hepatocellular Carcinoma
|
Fan, M.; Hu, J. et al.
|
preprint; Cancer Biology, 2023
|
https://doi.org/10.1101/2023.12.17.570960
|
|
«Control of the Phage Defense Mechanism by Quorum Sensing (QS) in Clinical Isolates of Klebsiella Pneumoniae »
|
Barrio-Pujante, A.; Bleriot, I. et al.
|
preprint; Microbiology, 2023
|
https://doi.org/10.1101/2023.12.05.570179
|
|
Deep MALDI-MS Spatial Omics Guided by Quantum Cascade Laser Mid-Infrared Imaging Microscopy
|
Gruber, L.; Schmidt, S.; Hopf, C. et al.
|
preprint; Biochemistry, 2023
|
https://doi.org/10.1101/2023.12.14.571637
|
|
Degradation of Fatty Acid Export Protein1 by Rhomboid-Like Protease11 Contributes to Cold Tolerance in Arabidopsis
|
John, A.; Kraemer, M. et al.
|
preprint; Plant Biology, 2023
|
https://doi.org/10.1101/2023.10.26.564161
|
|
Direct Translation of Incoming Retroviral RNA Genomes
|
Koppke, J.; Keller, L.-E. et al.
|
preprint; Microbiology, 2023
|
https://doi.org/10.1101/2023.05.02.539066
|
|
Dissecting the Properties of Circulating IgG against Group A Streptococcus through a Combined Systems Antigenomics-Serology Workflow
|
Chowdhury, S.; Gomez Toledo, A. et al.
|
preprint; Immunology, 2023
|
https://doi.org/10.1101/2023.11.07.565977
|
|
Dual-Probe Activity-Based Protein Profiling Reveals Site-Specific Differences in Protein Binding of EGFR-Directed Drugs
|
Van Bergen, W.; Fiala, J.; Heck, A. J. R. et al.
|
preprint; Biochemistry, 2023
|
https://doi.org/10.1101/2023.10.19.562725
|
|
ECM-Focused Proteomic Analysis of Ear Punch Regeneration in Acomys Cahirinus
|
McCabe, M. C.; Okamura, D. M. et al.
|
preprint; Molecular Biology, 2023
|
https://doi.org/10.1101/2023.10.11.561940
|
|
Evolutionarily Conserved Ovarian Fluid Proteins Are Responsible for Extending Egg Viability in Salmonid Fish
|
Gueho, A.; Zarski, D. et al.
|
preprint; Evolutionary Biology, 2023
|
https://doi.org/10.1101/2023.09.05.556347
|
|
Ex Vivo Structures from Spinach Leaves
|
Wang, J.; Johansen, N. T. et al.
|
preprint; Biochemistry, 2023
|
https://doi.org/10.1101/2023.10.13.562012
|
|
Fragment Ion Intensity Prediction Improves the Identification Rate of Non-Tryptic Peptides in timsTOF
|
Adams, C.; Gabriel, W. et al.
|
preprint; Bioinformatics, 2023
|
https://doi.org/10.1101/2023.07.17.549401
|
|
Generation of “OP7 Chimera” Defective Interfering Particle Preparations Free of Infectious Influenza A Virus That Shows Antiviral Efficacy in Mice
|
Dogra, T.; Pelz, L. et al.
|
preprint; Molecular Biology, 2023
|
https://doi.org/10.1101/2023.08.16.553516
|
|
H3K27me3 Spreading Organizes Canonical PRC1 Chromatin Architecture to Regulate Developmental Programs
|
Krug, B.; Hu, B. et al.
|
preprint; Molecular Biology, 2023
|
https://doi.org/10.1101/2023.11.28.567931
|
|
High-Throughput Extracellular Matrix Proteomics of Human Lungs Enabled by Photocleavable Surfactant and diaPASEF
|
Bayne, E. F.; Buck, K. M.; Ge, Y. et al.
|
preprint; Systems Biology, 2023
|
https://doi.org/10.1101/2023.08.17.553758
|
|
Hsf1 and the Molecular Chaperone Hsp90 Support a “Rewiring Stress Response” Leading to an Adaptive Cell Size Increase in Chronic Stress
|
Maiti, S.; Bhattacharya, K. et al.
|
preprint; Cell Biology, 2023
|
https://doi.org/10.1101/2023.01.25.525547
|
|
Human Serum Enriched After Absorption of Fish Cartilage Hydrolysate Enhances the Healing of Primary Human Dermal Fibroblasts Through the Expression of Proteins with Anti-Inflammatory and Immunomodulatory Properties
|
Le Faouder, J.; Gueho, A. et al.
|
preprint; Biology and Life Sciences, 2023
|
https://doi.org/10.20944/preprints202312.0550.v1
|
|
Inhibition of Mitochondrial Protein Import and Proteostasis by a Pro-Apoptotic Lipid
|
Fita-Torró, J.; Garrido-Huarte, J. L. et al.
|
preprint; Molecular Biology, 2023
|
https://doi.org/10.1101/2023.11.06.565743
|
|
Insulin and Exercise-Induced Phosphoproteomics of Human Skeletal Muscle Identify REPS1 as a New Regulator of Muscle Glucose Uptake
|
Larsen, J. K.; Lindqvist, C. B. et al.
|
preprint; Biochemistry, 2023
|
https://doi.org/10.1101/2023.11.10.566644
|
|
Integrated Proteomics Identifies Troponin I Isoform Switch as a Regulator of a Sarcomere-Metabolism Axis During Cardiac Regeneration
|
Aballo, T. J.; Mann, M. M.; Ge, Y. et al.
|
preprint; Developmental Biology, 2023
|
https://doi.org/10.1101/2023.10.20.563389
|
|
Interferon-α Promotes Neo-Antigen Formation and Preferential HLA-B-Restricted Antigen Presentation in Pancreatic β-Cells
|
Carré, A.; Zhou, Z.; Ternette, N. et al.
|
preprint; Immunology, 2023
|
https://doi.org/10.1101/2023.09.15.557918
|
|
Loss of Carnitine Palmitoyltransferase 1a Reduces Docosahexaenoic Acid-Containing Phospholipids and Drives Sexually Dimorphic Liver Disease in Mice
|
Zelows, M. M.; Cady, C. et al.
|
preprint; Physiology, 2023
|
https://doi.org/10.1101/2023.08.17.553705
|
|
Loss-of-Function Cancer-Associated Mutations in the EIF4G2 Non-Canonical Translation Initiation Factor
|
Meril, S.; Bhalsen, M. et al.
|
preprint; Cancer Biology, 2023
|
https://doi.org/10.1101/2023.08.22.554280
|
|
Massively Parallel Sample Preparation for Multiplexed Single-Cell Proteomics Using NPOP
|
Leduc, A.; Koury, L.; Slavov, N. et al.
|
preprint; Bioengineering, 2023
|
https://doi.org/10.1101/2023.11.27.568927
|
|
Maximizing Glycoproteomics Results through an Integrated PASEF Workflow
|
Baerenfaenger, M.; Post, M. A.; Van Gool, A. J. et al.
|
preprint; Biochemistry, 2023
|
https://doi.org/10.1101/2023.12.21.570555
|
|
Modeling the Simultaneous Dynamics of Proteins in Blood Plasma and the Cerebrospinal Fluid in Human in Vivo
|
Giroux, P.; Vialaret, J. et al.
|
preprint; Systems Biology, 2023
|
https://doi.org/10.1101/2023.12.28.573559
|
|
MTORC1 Regulates the Metabolic Switch of Postnatal Cardiomyocytes During Regeneration
|
Paltzer, W. G.; Aballo, T. J. et al.
|
preprint; Developmental Biology, 2023
|
https://doi.org/10.1101/2023.09.12.557400
|
|
Multi-Omics Profiling of Candida Albicans Grown on Solid Versus Liquid Media
|
Alhameed, R. A.; Semreen, M. H. et al.
|
Microorganisms 2023, 11(12), 2831
|
https://doi.org/10.3390/microorganisms11122831
|
|
Multi-Tiered Actions of Legionella Effectors to Modulate Host Rab10 Dynamics
|
Kubori, T.; Arasaki, K. et al.
|
preprint; Microbiology, 2023
|
https://doi.org/10.1101/2023.06.02.543523
|
|
Multiomics Analysis Revealed Anti-Freezing Mechanism of Staphylococcus Aureus in Its Anti-Freezing Strain
|
Youzhi, W.; Linjun, S. et al.
|
preprint; Microbiology, 2023
|
https://doi.org/10.1101/2023.10.02.560408
|
|
No Trade-off between Ovary Activation and Immune Protein Expression in Female Bumble Bees (Bombus Impatiens)
|
McAfee, A.; Chapman, A. et al.
|
preprint; Physiology, 2023
|
https://doi.org/10.1101/2023.10.27.564231
|
|
PAK1 and NF2/Merlin Jointly Drive Myelination by Remodeling Actin Cytoskeleton in Oligodendrocytes
|
Baudouin, L.; Adès, N. et al.
|
preprint; Neuroscience, 2023
|
https://doi.org/10.1101/2023.10.16.555467
|
|
PDGFRα/β Heterodimer Activation Negatively Affects Downstream ERK1/2 Signaling and Cellular Proliferation
|
Campaña, M. B.; Perkins, M. R. et al.
|
preprint; Cell Biology, 2023
|
https://doi.org/10.1101/2023.12.27.573428
|
|
Platelet Proteo-Transcriptomic Profiling Validates Mediators of Thrombosis and Proteostasis in Patients with Myeloproliferative Neoplasms
|
Kelliher, S.; Gamba, S. et al.
|
preprint; Pathology, 2023
|
https://doi.org/10.1101/2023.10.23.563619
|
|
QuantUMS: Uncertainty Minimisation Enables Confident Quantification in Proteomics
|
Kistner, F.; Grossmann, J. L.; Demichev, V. et al.
|
preprint; Bioinformatics, 2023
|
https://doi.org/10.1101/2023.06.20.545604
|
|
SARS-CoV-2 Hijacks Fragile X Mental Retardation Proteins for Efficient Infection
|
Garvanska, D.; Alvarado, R. E.; Mann, M. et al.
|
preprint; Microbiology, 2023
|
https://doi.org/10.1101/2023.09.01.555899
|
|
Sensitive, High-Throughput HLA-I and HLA-II Immunopeptidomics Using Parallel Accumulation-Serial Fragmentation Mass Spectrometry
|
Phulphagar, K. M.; Ctortecka, C.; Carr, S. A. et al.
|
preprint; Immunology, 2023
|
https://doi.org/10.1101/2023.03.10.532106
|
|
Single-Cell Spatial Proteomics Identifies the JAK/STAT Pathway as an Actionable Therapeutic Target in Lethal Cutaneous Drug Reactions
|
Nordmann, T.; Anderton, H.; Mann, M. et al.
|
preprint; Dermatology, 2023
|
https://doi.org/10.1101/2023.11.11.23295492
|
|
Spatial Lipidomics of Fresh-Frozen Spines
|
Bender, K. J.; Wang, Y. et al.
|
preprint; Biochemistry, 2023
|
https://doi.org/10.1101/2023.08.23.554488
|
|
Structure of the Yeast Ceramide Synthase
|
Schäfer, J.-H.; Clausmeyer, L. et al.
|
preprint; Biochemistry, 2023
|
https://doi.org/10.1101/2023.10.24.563787
|
|
Tenofovir Activation Is Diminished in the Brain and Liver of Creatine Kinase Brain-Type Knockout Mice
|
Eberhard, C. D.; Mosher, E. P.; Orsburn, B. C. et al.
|
preprint; Pharmacology and Toxicology, 2023
|
https://doi.org/10.1101/2023.09.25.559370
|
|
The Amino Acid Sequence Determines Protein Abundance through Its Conformational Stability and Reduced Synthesis Cost
|
Buric, F.; Viknander, S. et al.
|
preprint; Evolutionary Biology, 2023
|
https://doi.org/10.1101/2023.10.02.560091
|
|
The Cryo-EM Structure of ASK1 Reveals an Asymmetric Architecture Allosterically Modulated by TRX1
|
Honzejkova, K.; Kosek, D. et al.
|
preprint; Biochemistry, 2023
|
https://doi.org/10.1101/2023.12.20.572539
|
|
The Potential of Plasma HLA Peptides beyond Neoepitopes
|
Wahle, M.; Thielert, M.; Mann, M. et al.
|
preprint; Biochemistry, 2023
|
https://doi.org/10.1101/2023.09.05.556309
|
|
Trans-Omics Analysis of Post Injury Thrombo-Inflammation Identifies Endotypes and Trajectories in Trauma Patients
|
Cohen, M. J.; Erickson, C. B. et al.
|
preprint; Biochemistry, 2023
|
https://doi.org/10.1101/2023.08.16.553446
|
|
Unveiling IRF4-Steered Regulation of Context-Dependent Effector Programs in Th17 and Treg Cells
|
Gabele, A.; Sprang, M. et al.
|
preprint; Immunology, 2023
|
https://doi.org/10.1101/2023.09.14.557376
|
|
Unveiling the Role of Endoplasmic Reticulum Stress Pathways in Canine Demodicosis
|
Kelly, P. A.; McHugo, G. P. et al.
|
preprint; Immunology, 2023
|
https://doi.org/10.1101/2023.08.11.552979
|
|
Zika Virus Remodels and Hijacks IGF2BP2 Ribonucleoprotein Complex to Promote Viral Replication Organelle Biogenesis
|
Mazeaud, C.; Pfister, S. et al.
|
preprint; Microbiology, 2023
|
https://doi.org/10.1101/2023.12.08.570783
|
|
Induction of Amphotericin B Resistance in Susceptible Candida Auris by Extracellular Vesicles
|
Chan, W.; Chow, F. W.-N. et al.
|
Emerging Microbes & Infections 2022, 11 (1), 1900–1909.
|
https://doi.org/10.1080/22221751.2022.2098058
|
|
Subcortical Circuit Dysfunctions Delay Perceptual Decision-Making in Autism Models
|
Burnett, L. E.; Koppensteiner, P. et al.
|
preprint; Neuroscience, 2022
|
https://doi.org/10.1101/2022.10.11.511691
|
|
Ultra‐high Sensitivity Mass Spectrometry Quantifies Single‐cell Proteome Changes upon Perturbation
|
Brunner, A.; Thielert, M.; Mann, M. et al.
|
Molecular Systems Biology 2022, 18 (3), e10798
|
https://doi.org/10.15252/msb.202110798
|
|
Insights into Protein Post-Translational Modification Landscapes of Individual Human Cells by Trapped Ion Mobility Time-of-Flight Mass Spectrometry
|
Orsburn, B. C.; Yuan, Y.; Bumpus, N. N.
|
Nat Commun 2022, 13 (1), 7246
|
https://doi.org/10.1038/s41467-022-34919-w
|
|
Targeted Proteomics on Its Way to Discovery
|
Mendes, M. L.; Dittmar, G.
|
Proteomics 2022, 22 (15–16), 2100330
|
https://doi.org/10.1002/pmic.202100330
|
|
High-Throughput Plasma Proteomic Profiling. Clinical Applications of Mass Spectrometry in Biomolecular Analysis
|
Soni, R. K.
|
Methods in Molecular Biology; Springer US: New York, NY, 2022; Vol. 2546, pp 411–420
|
https://doi.org/10.1007/978-1-0716-2565-1_36
|
|
Top-Down Ion Mobility Separations of Isomeric Proteoforms
|
Berthias, F.; Thurman, H. A. et al.
|
Anal. Chem. 2022, acs.analchem.2c02948
|
https://doi.org/10.1021/acs.analchem.2c02948
|
|
HIP1R and Vimentin Immunohistochemistry Predict 1p/19q Status in IDH-Mutant Glioma
|
Felix, M.; Friedel, D. et al.
|
Neuro-Oncology 2022, 24 (12), 2121–2132
|
https://doi.org/10.1093/neuonc/noac111
|
|
CPEB1 Directs Muscle Stem Cell Activation by Reprogramming the Translational Landscape
|
Zeng, W.; Yue, L. et al.
|
Nat Commun 2022, 13 (1), 947
|
https://doi.org/10.1038/s41467-022-28612-1
|
|
CEND1 Deficiency Induces Mitochondrial Dysfunction and Cognitive Impairment in Alzheimer’s Disease
|
Xie, W.; Guo, D. et al.
|
Cell Death Differ 2022, 29 (12), 2417–2428
|
https://doi.org/10.1038/s41418-022-01027-7
|
|
A Novel Protein Encoded by ZCRB1-Induced CircHEATR5B Suppresses Aerobic Glycolysis of GBM through Phosphorylation of JMJD5
|
Song, J.; Zheng, J. et al.
|
J Exp Clin Cancer Res 2022, 41 (1), 171
|
https://doi.org/10.1186/s13046-022-02374-6
|
|
Mass Spectroscopy-Based Proteomics and Metabolomics Analysis of Triple-Positive Breast Cancer Cells Treated with Tamoxifen and/or Trastuzumab
|
Sharaf, B. M.; Giddey, A. D. et al.
|
Cancer Chemother Pharmacol 2022, 90 (6), 467–488
|
https://doi.org/10.1007/s00280-022-04478-4
|
|
Proteomic Profiling of End-Stage COVID-19 Lung Biopsies
|
Gindlhuber, J.; Tomin, T. et al.
|
Clin Proteom 2022, 19 (1), 46
|
https://doi.org/10.1186/s12014-022-09386-6
|
|
Dia-PASEF Data Analysis Using FragPipe and DIA-NN for Deep Proteomics of Low Sample Amounts
|
Demichev, V.; Szyrwiel, L. et al.
|
Nat Commun 2022, 13 (1), 3944
|
https://doi.org/10.1038/s41467-022-31492-0
|
|
Deep Proteome Profiling Reveals Signatures of Age and Sex Differences in Paw Skin and Sciatic Nerve of Naïve Mice
|
Xian, F.; Sondermann, J. R. et al
|
eLife 2022, 11, e81431
|
https://doi.org/10.7554/eLife.81431
|
|
A de Novo MS1 Feature Detector for the Bruker TimsTOF Pro
|
Wilding-McBride, D.; Webb, A. I.
|
PLoS ONE 2022, 17 (11), e0277122
|
https://doi.org/10.1371/journal.pone.0277122
|
|
Subcellular Redox Responses Reveal Different Cu-Dependent Antioxidant Defenses between Mitochondria and Cytosol
|
Zhang, Y.; Wen, M.-H. et al.
|
Metallomics 2022, 14 (11), mfac087
|
https://doi.org/10.1093/mtomcs/mfac087
|
|
Ion Mobility‐resolved Phosphoproteomics with Dia‐PASEF and Short Gradients
|
Oliinyk, D.; Meier, F.
|
Proteomics 2022, 2200032
|
https://doi.org/10.1002/pmic.202200032
|
|
Rapid Proteomic Characterization of Bacteriocin-Producing Enterococcus Faecium Strains from Foodstuffs
|
Quintela-Baluja, M.; Jobling, K. et al.
|
IJMS 2022, 23 (22), 13830
|
https://doi.org/10.3390/ijms232213830
|
|
Phenazopyridine Promotes RPS23RG1/Rps23rg1 Transcription and Ameliorates Alzheimer-Associated Phenotypes in Mice
|
Wang, C.; Zhang, Y. et al.
|
Neuropsychopharmacol. 2022, 47 (12), 2042–2050
|
https://doi.org/10.1038/s41386-022-01373-7
|
|
Micro‐pillar Array Columns (ΜPAC): An Efficient Tool for Comparing Tissue and Cultured Cells of Glioblastoma
|
Berg, H. E.; Halldórsson, S. et al.
|
Journal of Chromatography Open 2022, 2, 100047
|
https://doi.org/10.1016/j.jcoa.2022.100047
|
|
Slice-PASEF: Fragmenting All Ions for Maximum Sensitivity in Proteomics
|
Szyrwiel, L.; Sinn, L. et al.
|
preprint; Biochemistry, 2022
|
https://doi.org/10.1101/2022.10.31.514544
|
|
A Comprehensive Study of Gradient Conditions for Deep Proteome Discovery in a Complex Protein Matrix
|
Wei, X.; Liu, P. N. et al.
|
IJMS 2022, 23 (19), 11714
|
https://doi.org/10.3390/ijms231911714
|
|
Proteome-Wide Analysis of the Hippocampus in Adolescent Male Mice with Learning and Memory Impairment Caused by Chronic Ethanol Exposure
|
Liu, D.; Liu, S. et al.
|
Neurobiology of Learning and Memory 2022, 194, 107661
|
https://doi.org/10.1016/j.nlm.2022.107661
|
|
CLE Peptides Join the Plant Longevity Club
|
Han, H.; Zhuang, K. et al.
|
Trends in Plant Science 2022, 27 (10), 961–963
|
https://doi.org/10.1016/j.tplants.2022.07.001
|
|
Proteomic Analysis Reveals Zinc-Finger CCHC-Type Containing Protein 3 as a Factor Inhibiting Virus Infection by Promoting Innate Signaling
|
Chen, X.; Li, Z. et al.
|
Virus Research 2022, 319, 198876
|
https://doi.org/10.1016/j.virusres.2022.198876
|
|
Evaluation of Quantitative Platforms for Single Target Mass Spectrometry Imaging
|
Bowman, A. P.; Sawicki, J. et al.
|
Pharmaceuticals 2022, 15 (10), 1180
|
https://doi.org/10.3390/ph15101180
|
|
Parallelization with Dual-Trap Single-Column Configuration Maximizes Throughput of Proteomic Analysis
|
Kreimer, S.; Haghani, A. et al.
|
Anal. Chem. 2022, 94 (36), 12452–12460
|
https://doi.org/10.1021/acs.analchem.2c02609
|
|
HLAII Peptide Presentation of Infliximab Increases When Complexed with TNF
|
Casasola-LaMacchia, A.; Seward, R. J. et al.
|
Front. Immunol. 2022, 13, 932252
|
https://doi.org/10.3389/fimmu.2022.932252
|
|
Metabolomic and Proteomic Responses of Phaeodactylum Tricornutum to Hypoxia
|
Zhao, P.; Wu, Q. et al.
|
Ocean. Limnol. 2022, 40 (5), 1963–1973
|
https://doi.org/10.1007/s00343-021-1232-5
|
|
Rapid and In-Depth Coverage of the (Phospho-)Proteome With Deep Libraries and Optimal Window Design for Dia-PASEF
|
Skowronek, P.; Thielert, M. et al.
|
Molecular & Cellular Proteomics 2022, 21 (9), 100279
|
https://doi.org/10.1016/j.mcpro.2022.100279
|
|
Toll-Like Receptor 3 Overexpression Induces Invasion of Prostate Cancer Cells, Whereas Its Activation Triggers Apoptosis
|
Muresan, X. M.; Slabáková, E. et al.
|
The American Journal of Pathology 2022, 192 (9), 1321–1335
|
https://doi.org/10.1016/j.ajpath.2022.05.009
|
|
Discovering the Secret of Diseases by Incorporated Tear Exosomes Analysis via Rapid-Isolation System: ITEARS
|
Hu, L.; Zhang, T. et al.
|
ACS Nano 2022, 16 (8), 11720–11732
|
https://doi.org/10.1021/acsnano.2c02531
|
|
Discovery of a Potent and Selective Degrader for USP7
|
Pei, Y.; Fu, J. et al.
|
Angewandte Chemie 2022, 134 (33)
|
https://doi.org/10.1002/ange.202204395
|
|
TIMSCONVERT: A Workflow to Convert Trapped Ion Mobility Data to Open Data Formats
|
Luu, G. T.; Freitas, M. A et al.
|
Bioinformatics 2022, 38 (16), 4046–4047
|
https://doi.org/10.1093/bioinformatics/btac419
|
|
The Cluster Transfer Function of AtNEET Supports the Ferredoxin–Thioredoxin Network of Plant Cells
|
Zandalinas, S. I.; Song, L. et al.
|
Antioxidants 2022, 11 (8), 1533.
|
https://doi.org/10.3390/antiox11081533
|
|
Enhancement of Proteome Coverage by Ion Mobility Fractionation Coupled to PASEF on a TIMS–QTOF Instrument
|
Guergues, J.; Wohlfahrt, J. et al.
|
Proteome Res. 2022, 21 (8), 2036–2044
|
https://doi.org/10.1021/acs.jproteome.2c00336
|
|
Engineering of Succinyl-CoA Metabolism in View of Succinylation Regulation to Improve the Erythromycin Production
|
Ke, X.; Jiang, X. et al.
|
Appl Microbiol Biotechnol 2022, 106 (13), 5153–5165
|
https://doi.org/10.1007/s00253-022-12060-4
|
|
The Succinylome of Pinctada Fucata Martensii Implicates Lysine Succinylation in the Allograft-Induced Stress Response
|
Zhang, M.; Lu, J.
|
Fish & Shellfish Immunology 2022, 127, 585–593
|
https://doi.org/10.1016/j.fsi.2022.07.009
|
|
In-Depth Profiling and Quantification of the Lysine Acetylome in Hepatocellular Carcinoma with a Trapped Ion Mobility Mass Spectrometer
|
Xu, J.; Guan, X. et al.
|
Molecular & Cellular Proteomics 2022, 21 (8), 100255
|
https://doi.org/10.1016/j.mcpro.2022.100255
|
|
Next Generation VAMS®–Trypsin Immobilization for Instant Proteolysis in Bottom-up Protein Determination
|
Reubsaet, L.; Thiede, B. et al.
|
Advances in Sample Preparation 2022, 3, 100027
|
https://doi.org/10.1016/j.sampre.2022.100027
|
|
Coral and It’s Symbionts Responses to the Typical Global Marine Pollutant BaP by 4D-Proteomics Approach
|
Pei, Y.; Chen, S. et al.
|
Environmental Pollution 2022, 307, 119440
|
https://doi.org/10.1016/j.envpol.2022.119440
|
|
Deep Visual Proteomics defines single-cell identity and heterogeneity
|
Mund, A.; Coscia, F. et al.
|
Nat Biotechnol 2022, 40 (8), 1231–1240
|
https://doi.org/10.1038/s41587-022-01302-5
|
|
Molecular Mechanism of Toxin Neutralization in the HipBST Toxin-Antitoxin System of Legionella Pneumophila
|
Zhen, X.; Wu, Y. et al.
|
Nat Commun 2022, 13 (1), 4333
|
https://doi.org/10.1038/s41467-022-32049-x
|
|
Structural Analyses of Human Ryanodine Receptor Type 2 Channels Reveal the Mechanisms for Sudden Cardiac Death and Treatment
|
Miotto, M. C.; Weninger, G. et al.
|
Sci. Adv. 2022, 8 (29), eabo1272
|
https://doi.org/10.1126/sciadv.abo1272
|
|
Locality-Sensitive Hashing Enables Efficient and Scalable Signal Classification in High-Throughput Mass Spectrometry Raw Data
|
Bob, K.; Teschner, D. et al.
|
BMC Bioinformatics 2022, 23 (1), 287
|
https://doi.org/10.1186/s12859-022-04833-55
|
|
Proteomic Analysis Reveals Key Differences between Squamous Cell Carcinomas and Adenocarcinomas across Multiple Tissues
|
Song, Q.; Yang, Y. et al.
|
Nat Commun 2022, 13 (1), 4167
|
https://doi.org/10.1038/s41467-022-31719-00
|
|
Proteomic Profile of Mouse Oocytes after Vitrification: A Quantitative Analysis Based on 4D Label-Free Technique
|
Zhuan, Q.; Du, X.et al.
|
Theriogenology 2022, 187, 64–73
|
https://doi.org/10.1016/j.theriogenology.2022.04.028
|
|
A Designer Nanoparticle Platform for Controlled Intracellular Delivery of Bioactive Macromolecules: Inhibition of Ubiquitin-Specific Protease 7 in Breast Cancer Cells
|
McClary, W. D.; Catala, A. et al.
|
ACS Chem. Biol. 2022, 17 (7), 1853–1865
|
https://doi.org/10.1021/acschembio.2c00256
|
|
On-Chip Preconcentration Microchip Capillary Electrophoresis Based CE-PRM-LIVE for High-Throughput Selectivity Profiling of Deubiquitinase Inhibitors
|
Zhu, H.; Mellors, J. S. et al.
|
Anal. Chem. 2022, 94 (27), 9508–9513
|
https://doi.org/10.1021/acs.analchem.2c01337
|
|
Ethanolamine‐phosphate on the Second Mannose Is a Preferential Bridge for Some GPI‐anchored Proteins
|
Ishida, M.; Maki, Y.; Ninomiya, A. et al.
|
EMBO Reports 2022, 23 (7)
|
https://doi.org/10.15252/embr.202154352
|
|
Cyclic Immonium Ion of Lactyllysine Reveals Widespread Lactylation in the Human Proteome
|
Wan, N.; Wang, N. et al.
|
Nat Methods 2022, 19 (7), 854–864
|
https://doi.org/10.1038/s41592-022-01523-1
|
|
Zwitter-Ionic Monolith-Based Spintip Column Coupled with Evosep One Liquid Chromatography for High-Throughput Proteomic Analysis
|
Su, Y.; Wang, X. et al.
|
Journal of Chromatography A 2022, 1675, 463122
|
https://doi.org/10.1016/j.chroma.2022.463122
|
|
Super-Enhancer Hypermutation Alters Oncogene Expression in B Cell Lymphoma
|
Bal, E.; Kumar, R. et al.
|
Nature 2022, 607 (7920), 808–815
|
https://doi.org/10.1038/s41586-022-04906-8
|
|
Microanalysis of Brain Angiotensin Peptides Using Ultrasensitive Capillary Electrophoresis Trapped Ion Mobility Mass Spectrometry
|
DeLaney, K.; Jia, D. et al.
|
Anal. Chem. 2022, 94 (25), 9018–9025
|
https://doi.org/10.1021/acs.analchem.2c01062
|
|
Sucrose Nonfermenting-1-Related Protein Kinase 1 Regulates Sheath-to-Panicle Transport of Nonstructural Carbohydrates during Rice Grain Filling
|
Hu, Y.; Liu, J. et al.
|
Plant Physiology 2022, 189 (3), 1694–1714
|
https://doi.org/10.1093/plphys/kiac124
|
|
Comparative Analysis of Extracellular Vesicles (EVs) from Human and Feline Plasma
|
Howard, J.; Wynne, K. et al.
|
Sci Rep 2022, 12 (1), 10851
|
https://doi.org/10.1038/s41598-022-14211-z
|
|
Impact of in Vitro Hormone Treatments on the Bibenzyl Production of Radula Complanata
|
Blatt-Janmaat, K.; Neumann, S. et al.
|
Botany 2022, cjb-2022-0048
|
https://doi.org/10.1139/cjb-2022-0048
|
|
Human RIPK3 C-Lobe Phosphorylation Is Essential for Necroptotic Signaling
|
Meng, Y.; Horne, C. R. et al.
|
Cell Death Dis 2022, 13 (6), 1–12
|
https://doi.org/10.1038/s41419-022-05009-y
|
|
Molecular Evidence of Chemical Disguise by the Socially Parasitic Spiny Ant Polyrhachis Lamellidens (Hymenoptera: Formicidae) When Invading a Host Colony
|
Iwai, H.; Mori, M. et al.
|
Front. Ecol. Evol. 2022, 10, 915517
|
https://doi.org/10.3389/fevo.2022.915517
|
|
Targeted Protein Quantitation in Human Body Fluids by Mass Spectrometry
|
Chen, Y.; Liao, W. et al.
|
Mass Spectrometry Reviews 2022
|
https://doi.org/10.1002/mas.21788
|
|
Innate Variability in Physiological and Omics Aspects of the Beta Thalassemia Trait-Specific Donor Variation Effects
|
Anastasiadi, A. T.; Tzounakas, V. L. et al.
|
Front. Physiol. 2022, 13, 907444
|
https://doi.org/10.3389/fphys.2022.907444
|
|
Zinc Is a Master-Regulator of Sperm Function Associated with Binding, Motility, and Metabolic Modulation during Porcine Sperm Capacitation
|
Zigo, M.; Kerns, K. et al.
|
Commun Biol 2022, 5 (1), 1–12
|
https://doi.org/10.1038/s42003-022-03485-8
|
|
Different Oligomeric States of the Tumor Suppressor P53 Show Identical Binding Behavior towards the S100β Homodimer
|
Wei, A. A. J.; Iacobucci, C. et al.
|
ChemBioChem 2022, 23 (11)
|
https://doi.org/10.1002/cbic.202100665
|
|
Cryo-EM Structures of Gid12-Bound GID E3 Reveal Steric Blockade as a Mechanism Inhibiting Substrate Ubiquitylation
|
Qiao, S.; Lee, C.-W. et al.
|
Nat Commun 2022, 13 (1), 3041
|
https://doi.org/10.1038/s41467-022-30803-9
|
|
Multimodal Imaging Mass Spectrometry of Murine Gastrointestinal Tract with Retained Luminal Content
|
Guiberson, E. R.; Good, C. J. et al.
|
J. Am. Soc. Mass Spectrom. 2022, 33 (6), 1073–1076
|
https://doi.org/10.1021/jasms.1c00360
|
|
Using Plasma Proteomics to Investigate Viral Infections of the Central Nervous System Including Patients with HIV-Associated Neurocognitive Disorders
|
Ahmed, S.; Viode, A. et al.
|
J. Neurovirol. 2022, 28 (3), 341–354
|
https://doi.org/10.1007/s13365-022-01077-0
|
|
Integrated Insights into the Mechanisms Underlying Sepsis-Induced Myocardial Depression Using a Quantitative Global Proteomic Analysis
|
Yang, N.; Wang, W. et al.
|
Journal of Proteomics 2022, 262, 104599
|
https://doi.org/10.1016/j.jprot.2022.104599
|
|
Human Umbilical Cord Mesenchymal Stem Cell-Derived Treatment of Severe Pulmonary Arterial Hypertension
|
Hansmann, G.; Chouvarine, P. et al.
|
Nat Cardiovasc Res 2022, 1 (6), 568–576
|
https://doi.org/10.1038/s44161-022-00083-z
|
|
Lockd Promotes Myoblast Proliferation and Muscle Regeneration via Binding with DHX36 to Facilitate 5′ UTR RG4 Unwinding and Anp32e Translation
|
Chen, X.; Xue, G. et al.
|
Cell Reports 2022, 39 (10), 110927
|
https://doi.org/10.1016/j.celrep.2022.110927
|
|
Complex Effects of Mg-Biomaterials on the Osteoblast Cell Machinery: A Proteomic Study
|
Cerqueira, A.; García-Arnáez, I. et al.
|
Biomaterials Advances 2022, 137, 212826
|
https://doi.org/10.1016/j.bioadv.2022.212826
|
|
Extracellular Vesicles from Thyroid Cancer Harbor a Functional Machinery Involved in Extracellular Matrix Remodeling
|
Bravo-Miana, R. del C.; Soler, M. F. et al.
|
European Journal of Cell Biology 2022, 101 (3), 151254
|
https://doi.org/10.1016/j.ejcb.2022.151254
|
|
Systematic Identification of the Lysine Lactylation in the Protozoan Parasite Toxoplasma Gondii
|
Zhao, W.; Yu, H. et al.
|
Parasites & Vectors 2022, 15 (1), 180
|
https://doi.org/10.1186/s13071-022-05315-6
|
|
Synthetic Lethality between TP53 and ENDOD1
|
Tang, Z.; Zeng, M. et al.
|
Nat Commun 2022, 13 (1), 2861
|
https://doi.org/10.1038/s41467-022-30311-w
|
|
Reovirus Μ2 Protein Modulates Host Cell Alternative Splicing by Reducing Protein Levels of U5 SnRNP Core Components
|
Boudreault, S.; Durand, M. et al.
|
Nucleic Acids Research 2022, 50 (9), 5263–5281
|
https://doi.org/10.1093/nar/gkac272
|
|
Essential Role of Cp190 in Physical and Regulatory Boundary Formation
|
Kaushal, A.; Dorier, J. et al.
|
Sci. Adv. 2022, 8 (19), eabl8834
|
https://doi.org/10.1126/sciadv.abl8834
|
|
Inducible Degradation of Dosage Compensation Protein DPY-27 Facilitates Isolation of Caenorhabditis Elegans Males for Molecular and Biochemical Analyses
|
Li, Q.; Kaur, A. et al.
|
G3 Genes|Genomes|Genetics 2022, 12 (5), jkac085
|
https://doi.org/10.1093/g3journal/jkac085
|
|
Proteomic Analysis of Pollen–Stigma Interaction between Vitis Rotundifolia and Vitis Vinifera
|
Wang, B.; Wu, W. et al.
|
J. Amer. Soc. Hort. Sci. 2022, 147 (3), 152–160
|
https://doi.org/10.21273/JASHS05153-21
|
|
P97 Dysfunction Underlies a Loss of Quality Control of Damaged Membrane Proteins and Promotes Oxidative Stress and Sickling in Sickle Cell Disease
|
Song, A.; Wen, A. Q. et al.
|
The FASEB Journal 2022, 36 (5)
|
https://doi.org/10.1096/fj.202101500RR
|
|
2 Deoxy-D-Glucose Augments the Mitochondrial Respiratory Chain in Heart
|
Aiestaran-Zelaia, I.; Sánchez-Guisado, M. J. et al.
|
J. Sci Rep 2022, 12 (1), 6890
|
https://doi.org/10.1038/s41598-022-10168-1
|
|
The Meta-Substituted Isomer of TMPyP Enables More Effective Photodynamic Bacterial Inactivation than Para-TMPyP In Vitro
|
Schulz, S.; Ziganshyna, S. et al.
|
Microorganisms 2022, 10 (5), 858
|
https://doi.org/10.3390/microorganisms10050858
|
|
An Anti-Influenza A Virus Microbial Metabolite Acts by Degrading Viral Endonuclease PA
|
Zhao, J.; Wang, J. et al.
|
Nat Commun 2022, 13 (1), 2079
|
https://doi.org/10.1038/s41467-022-29690-x
|
|
Phosphatidylcholines (PCs) Serve as Biomarkers for Prognosis of Esophageal Squamous Cell Carcinoma (ESCC) and Compromise Antitumor Efficacy of Focal Adhesion Kinase (FAK) Inhibitor
|
Zhan, Q.; Chen, J. et al.
|
preprint; In Review, 2022
|
https://doi.org/10.21203/rs.3.rs-1556187/v1
|
|
Development of NanoLuc-Targeting Protein Degraders and a Universal Reporter System to Benchmark Tag-Targeted Degradation Platforms
|
Grohmann, C.; Magtoto, C. M. et al.
|
Nat Commun 2022, 13 (1), 2073
|
https://doi.org/10.1038/s41467-022-29670-1
|
|
Specific and Reversible Enrichment of Early-Stage Glycated Proteome Based on Thiazolidine Chemistry and Palladium-Mediated Cleavage
|
Wu, L.; Fei, W. et al.
|
Anal. Chem. 2022, 94 (13), 5213–5220
|
https://doi.org/10.1021/acs.analchem.1c03648
|
|
Sickle-like Inertial Microfluidic System for Online Rare Cell Separation and Tandem Label-Free Quantitative Proteomics (Orcs-Proteomics)
|
Wang, L.; Abdulla, A. et al.
|
Analytical Chemistry 2022
|
https://doi.org/10.1021/acs.analchem.2c00679
|
|
Downregulation of KRAB Zinc Finger Proteins in 5-Fluorouracil Resistant Colorectal Cancer Cells
|
Chauvin, A.; Bergeron, D. et al.
|
BMC Cancer 2022, 22 (1), 363
|
https://doi.org/10.1186/s12885-022-09417-3
|
|
FAST-IT: F Ind A S Imple T Est — I n T IA (Transient Ischaemic Attack): A Prospective Cohort Study to Develop a Multivariable Prediction Model for Diagnosis of TIA through Proteomic Discovery and Candidate Lipid Mass Spectrometry, Neuroimaging and Machine Learning — Study Protocol
|
Milton, A. G.; Lau, S. et al.
|
BMJ Open 2022, 12 (4), e045908
|
https://doi.org/10.1136/bmjopen-2020-045908
|
|
Proteomic Study of Hepatic Apoptosis Induced by Overexpression of G0S2
|
Qiu, Y.; Zhou, X. et al.
|
preprint; In Review, 2022
|
https://doi.org/10.21203/rs.3.rs-1342968/v1
|
|
Comprehensive Spectral Libraries for Various Rabbit Eye Tissue Proteomes
|
Qin, G.; Zhang, P. et al.
|
Sci Data 2022, 9 (1), 111
|
https://doi.org/10.1038/s41597-022-01241-5
|
|
Protective Mechanism of Leucine and Isoleucine against H2O2-Induced Oxidative Damage in Bovine Mammary Epithelial Cells
|
Wu, S.; Liu, X. et al.
|
Oxidative Medicine and Cellular Longevity 2022, 2022, 1–22
|
https://doi.org/10.1155/2022/4013575
|
|
Paeoniflorin Upregulates Mitochondrial Thioredoxin of Schwann Cells to Improve Diabetic Peripheral Neuropathy Indicated by 4D Label-Free Quantitative Proteomics
|
Yang, X.; Li, X. et al.
|
Oxidative Medicine and Cellular Longevity 2022, 2022, 1–10
|
https://doi.org/10.1155/2022/4775645
|
|
Chaperone-mediated autophagy controls proteomic and transcriptomic pathways to maintain glioma stem cell activity
|
Auzmendi-Iriarte, J.; Otaegi-Ugartemendia, M. et al.
|
Cancer Res 2022
|
https://doi.org/10.1158/0008-5472.CAN-21-2161
|
|
Reconstruction and analysis of a large-scale binary Ras-effector signaling network
|
Catozzi, S.; Ternet, C. et al.
|
Cell Commun Signal 2022, 20, 24
|
https://doi.org/10.1186/s12964-022-00823-5
|
|
Integrative proteomic and phosphoproteomic profiling of invasive micropapillary breast carcinoma
|
Chen, X.; Lin, Y. et al.
|
Journal of Proteomics 2022, 257
|
https://doi.org/10.1016/j.jprot.2022.104511
|
|
AP-4-mediated axonal transport controls endocannabinoid production in neurons
|
Davies, A.K.; Alecu, J.E. et al.
|
Nat Commun 2022, 13, 1058
|
https://doi.org/10.1038/s41467-022-28609-w
|
|
Combined Impact of Magnetic Force and Spaceflight Conditions on Escherichia coli Physiology
|
Domnin, P.A.; Parfenov, V.A.; Nikolaev, E.N. et al.
|
IJMS 2022, 23, 1837
|
https://doi.org/10.3390/ijms23031837
|
|
DNA damage contributes to neurotoxic inflammation in Aicardi-Goutières syndrome astrocytes
|
Giordano, A.M.S.; Luciani, M. et al.
|
Journal of Experimental Medicine 2022, 219
|
https://doi.org/10.1084/jem.20211121
|
|
Quantitative Proteomics Analysis Expands the Roles of Lysine β-Hydroxybutyrylation Pathway in Response to Environmental β-Hydroxybutyrate
|
Hou, W.; Liu, G. et al.
|
Oxidative Medicine and Cellular Longevity 2022, 1–15
|
https://doi.org/10.1155/2022/4592170
|
|
Diagnostic Ion Data Analysis Reduction (DIDAR) allows rapid quality control analysis and filtering of multiplexed single cell proteomics data
|
Jenkins, C.; Orsburn, B.C.
|
prepint; Biochemistry 2022
|
https://doi.org/10.1101/2022.02.22.481489
|
|
Nedd4-2 binding to 14-3-3 modulates the accessibility of its catalytic site and WW domains
|
Joshi, R.; Pohl, P. et al.
|
Biophysical Journal 2022, S0006349522001497
|
https://doi.org/10.1016/j.bpj.2022.02.025
|
|
High-light-inducible proteins HliA and HliB: pigment binding and protein–protein interactions
|
Konert, M.M.; Wysocka, A. et al.
|
Photosynth Res 2022
|
https://doi.org/10.1007/s11120-022-00904-z
|
|
Absolute quantification of viral proteins during single-round replication of MDCK suspension cells
|
Küchler, J.; Püttker, S. et al.
|
Journal of Proteomics 2022, 259
|
https://doi.org/10.1016/j.jprot.2022.104544
|
|
Ibrutinib reverses IL-6-induced osimertinib resistance through inhibition of Laminin α5/FAK signaling
|
Li, L.; Li, Z. et al.
|
Commun Biol 2022, 5, 155
|
https://doi.org/10.1038/s42003-022-03111-7
|
|
Detection of Mycotoxins in Highly Matrix-Loaded House-Dust Samples by QTOF-HRMS, IM-QTOF-HRMS, and TQMS: Advantages and Disadvantages
|
Lindemann, V.; Schmidt, J. et al.
|
Anal. Chem. 2022, 94, 4209–4217
|
https://doi.org/10.1021/acs.analchem.1c04254
|
|
Proximity proteomics of C9orf72 dipeptide repeat proteins identifies molecular chaperones as modifiers of poly-GA aggregation
|
Liu, F.; Morderer, D. et al.
|
acta neuropathol commun 2022, 10, 22
|
https://doi.org/10.1186/s40478-022-01322-x
|
|
Isoindolines and phthalides from the rhizomes of Ligusticum chuanxiong and their relaxant effects on the uterine smooth muscle
|
Liu, J.; Feng, R. et al.
|
Phytochemistry 2022, 198
|
https://doi.org/10.1016/j.phytochem.2022.113159
|
|
LKB1 drives stasis and C/EBP-mediated reprogramming to an alveolar type II fate in lung cancer
|
Murray, C.W.; Brady, J.J. et al.
|
Nat Commun 2022, 13, 1090
|
https://doi.org/10.1038/s41467-022-28619-8
|
|
Smart proteolysis samplers for pre‐lab bottom‐up protein analysis – Performance of on‐paper digestion compared to conventional digestion
|
Nguyen, M.T.; Halvorsen, T.G. et al.
|
Separation Science Plus 2022
|
https://doi.org/10.1002/sscp.202100062
|
|
Single Cell Proteomics Using a Trapped Ion Mobility Time-of-Flight Mass Spectrometer Provides Insight into the Post-translational Modification Landscape of Individual Human Cells
|
Orsburn, B.C.; Yuan, Y.; Bumpus, N.N.
|
preprint; Biochemistry 2022
|
https://doi.org/10.1101/2022.02.12.480144
|
|
Hornerin deposits in neuronal intranuclear inclusion disease: direct identification of proteins with compositionally biased regions in inclusions
|
Park, H.; Yamanaka, T. et al.
|
acta neuropathol commun 2022, 10, 28
|
https://doi.org/10.1186/s40478-022-01333-8
|
|
Elasnin Effectively Eradicates Daptomycin-Resistant Methicillin-Resistant Staphylococcus aureus Biofilms
|
Sulaiman, J.E.; Long, L. et al.
|
Microbiol Spectr 2022, 10
|
https://doi.org/10.1128/spectrum.02320-21
|
|
Time-related accurate investigation of multicomponent drug interventions in heart failure
|
Wang, M.; Wu, Y. et al.
|
Phytomedicine Plus 2022, 2
|
https://doi.org/10.1016/j.phyplu.2022.100242
|
|
Fritted tip capillary column with negligible dead volume facilitated ultrasensitive and deep proteomics
|
Yang, Y.; Su, Y. et al.
|
Analytica Chimica Acta 2022, 1201
|
https://doi.org/10.1016/j.aca.2022.339615
|
|
Analyzing changes in tear proteins of Sjogren’s syndrome patients with timsTOF pro
|
Akkurt Arslan, M.; Kolman, I. et al.
|
Acta Ophthalmologica 2022, 100
|
https://doi.org/10.1111/j.1755-3768.2022.167
|
|
Distribution of proteins in the different parts of the schirmer strip
|
Arslan, M.A.; Kolman, I. et al.
|
Acta Ophthalmologica 2022, 100
|
https://doi.org/10.1111/j.1755-3768.2022.179
|
|
Optimization of proteomics sample preparation for identification of host and bacterial proteins in mouse feces
|
Baniasad, M.; Kim, Y. et al.
|
Anal Bioanal Chem 2022
|
https://doi.org/10.1007/s00216-022-03885-z
|
|
New insights into the phosphorylation of the threonine motif of the β1 integrin cytoplasmic domain
|
Böttcher, R.T.; Strohmeyer, N. et al.
|
Life Sci. Alliance 2022, 5
|
https://doi.org/10.26508/lsa.202101301
|
|
The Parallel Reaction Monitoring-Parallel Accumulation–Serial Fragmentation (prm-PASEF) Approach for Multiplexed Absolute Quantitation of Proteins in Human Plasma
|
Brzhozovskiy, A.; Kononikhin, A et al.
|
Anal. Chem. 2022, 94, 2016–2022
|
https://doi.org/10.1021/acs.analchem.1c03782
|
|
Low-intensity blast induces acute glutamatergic hyperexcitability in mouse hippocampus leading to long-term learning deficits and altered expression of proteins involved in synaptic plasticity and serine protease inhibitors
|
Chen, S.; Siedhoff, H.R. et al.
|
Neurobiology of Disease 2022, 165
|
https://doi.org/10.1016/j.nbd.2022.105634
|
|
Lima1 mediates the pluripotency control of membrane dynamics and cellular metabolism
|
Duethorn, B.; Groll, F. et al.
|
Nat Commun 2022, 13, 610
|
https://doi.org/10.1038/s41467-022-28139-5
|
|
FASN-dependent de novo lipogenesis is required for brain development
|
Gonzalez-Bohorquez, D.; Gallego López, I.M. et al.
|
Proc Natl Acad Sci USA 2022, 119
|
https://doi.org/10.1073/pnas.2112040119
|
|
p-NCS-Bn-NODAGA as a bifunctional chelator for radiolabeling with the 186Re/99mTc-tricarbonyl core: Radiochemistry with model complexes and a GRPR-targeting peptide
|
Kankanamalage, P.; Hoerres, R. et al.
|
Nuclear Medicine and Biology 2022, 108–109, 1–9
|
https://doi.org/10.1016/j.nucmedbio.2022.01.004
|
|
Enhanced competitive protein exchange at the nano-bio interface enables ultra-deep coverage of the human plasma proteome
|
Hornburg, D.; Ferdosi, S. et al.
|
preprint; Biophysics 2022
|
https://doi.org/10.1101/2022.01.08.475439
|
|
Proteomic datasets of HeLa and SiHa cell lines acquired by DDA-PASEF and diaPASEF
|
Huang, Z.; Kong, W. et al.
|
Data in Brief 2022, 41
|
https://doi.org/10.1016/j.dib.2022.107919
|
|
Analysis of the molecular mechanism of inosine monophosphate deposition in Jingyuan chicken muscles using a proteomic approach
|
Huang, Z.; Zhang, J. et al.
|
Poultry Science 2022
|
https://doi.org/10.1016/j.psj.2022.101741
|
|
The [2Fe‐2S] protein CISD2 plays a key role in preventing iron accumulation in cardiomyocytes
|
Karmi, O.; Rowland, L. et al.
|
FEBS Letters 2022
|
https://doi.org/10.1002/1873-3468.14277
|
|
Altered glycosylation of several metastasis-associated glycoproteins with terminal GalNAc defines the highly invasive cancer cell phenotype
|
Khosrowabadi, E.; Wenta, T. et al.
|
Oncotarget 2022, 13, 73–89
|
https://doi.org/10.18632/oncotarget.28167
|
|
Mitochondrial protein hyperacetylation underpins heart failure with preserved ejection fraction in mice
|
Liu, X.; Zhang, Y. et al.
|
Journal of Molecular and Cellular Cardiology 2022, 165, 76–85
|
https://doi.org/10.1016/j.yjmcc.2021.12.015
|
|
Ion Mobility Coupled to a Time-of-Flight Mass Analyzer Combined With Fragment Intensity Predictions Improves Identification of Classical Bioactive Peptides and Small Open Reading Frame-Encoded Peptides
|
Peeters, M.K.R.; Baggerman, G. et al.
|
Front. Cell Dev. Biol. 2021, 9
|
https://doi.org/10.3389/fcell.2021.720570
|
|
Proteomics and Transcriptomics Uncover Key Processes for Elasnin Tolerance in Methicillin-Resistant Staphylococcus aureus
|
Sulaiman, J.E.; Long, L. et al.
|
mSystems 2022
|
https://doi.org/10.1128/msystems.01393-21
|
|
Protein phosphorylation in hemocytes of Fenneropenaeus chinensis in response to white spot syndrome virus infection
|
Tang, X.; Liu, T. et al.
|
Fish & Shellfish Immunology 2022, 122, 106–114
|
https://doi.org/10.1016/j.fsi.2022.01.038
|
|
Niban apoptosis regulator 1 promotes gemcitabine resistance by activating the focal adhesion kinase signaling pathway in bladder cancer
|
Tong, S.; Yin, H. et al.
|
J. Cancer 2022, 13, 1103–1118
|
https://doi.org/10.7150/jca.66248
|
|
Proteomics based markers of clinical pain severity in juvenile idiopathic arthritis
|
Van Der Heijden, H.; Fatou, B.; Steen, H. et al.
|
Pediatr Rheumatol 2022, 20, 3
|
https://doi.org/10.1186/s12969-022-00662-1
|
|
Doxycycline Alters the Porcine Renal Proteome and Degradome during Hypothermic Machine Perfusion
|
van Leeuwen, L.; Venema, L.H. et al.
|
CIMB 2022, 44, 559–577
|
https://doi.org/10.3390/cimb44020039
|
|
Erythrocyte transglutaminase-2 combats hypoxia and chronic kidney disease by promoting oxygen delivery and carnitine homeostasis
|
Xu, P.; Chen, C. et al.
|
Cell Metabolism 2022, 34
|
https://doi.org/10.1016/j.cmet.2021.12.019
|
|
Evaluation of the Sensitivity of Proteomics Methods Using the Absolute Copy Number of Proteins in a Single Cell as a Metric
|
Orsburn, B. C.
|
Proteomes 2021, 9 (3), 34
|
https://doi.org/10.3390/proteomes9030034
|
|
Proteomic Analysis of Tears and Conjunctival Cells Collected with Schirmer Strips Using timsTOF Pro: Preanalytical Considerations
|
Akkurt Arslan, M.; Kolman, I. et al.
|
Metabolites 2021, 12, 2
|
https://doi.org/10.3390/metabo12010002
|
|
Trapped Ion Mobility Spectrometry Reduces Spectral Complexity in Mass Spectrometry-Based Proteomics
|
Charkow, J.; Röst, H.L.
|
Anal. Chem. 2021, 93, 16751–16758
|
https://doi.org/10.1021/acs.analchem.1c01399
|
|
Covalent Coupling of HIV-1 Glycoprotein Trimers to Biodegradable Calcium Phosphate Nanoparticles via Genetically Encoded Aldehyde-Tags
|
Damm, D.; Kostka, K. et al.
|
Acta Biomaterialia 2021, S1742706121008291
|
https://doi.org/10.1016/j.actbio.2021.12.022
|
|
Comparison of TIMS-PASEF quantitative proteomics data-analysis workflows using FragPipe, DIA-NN, and Spectronaut from a user’s perspective
|
Fernández-Vega, A.; Farabegoli, F. et al.
|
preprint; Molecular Biology 2021
|
https://doi.org/10.1101/2021.11.29.470373
|
|
Fast Fluoroalkylation of Proteins Uncovers the Structure and Dynamics of Biological Macromolecules
|
Fojtík, L.; Fiala, J.; Novák, P. et al.
|
J. Am. Chem. Soc. 2021, 143, 20670–20679
|
https://doi.org/10.1021/jacs.1c07771
|
|
Functionalized Terpolymer-Brush-Based Biointerface with Improved Antifouling Properties for Ultra-Sensitive Direct Detection of Virus in Crude Clinical Samples
|
Forinová, M.; Pilipenco, A. et al.
|
ACS Appl. Mater. Interfaces 2021, 13, 60612–60624
|
https://doi.org/10.1021/acsami.1c16930
|
|
PIPP: Improving peptide identity propagation using neural networks
|
Hediyeh-zadeh, S.; Martin, J.; Webb, A.I. et al.
|
preprint; Bioinformatics 2021
|
https://doi.org/10.1101/2021.12.05.471338
|
|
Comprehensive Transcriptome Sequencing of Tanaidacea with Proteomic Evidences for Their Silk
|
Kakui, K.; Fleming, J.F. et al.
|
Genome Biology and Evolution 2021, 13
|
https://doi.org/10.1093/gbe/evab281
|
|
An ultra-sensitive and easy-to-use multiplexed single-cell proteomic analysis
|
Li, C.; Gu, L. et al.
|
preprint; Systems Biology 2022
|
https://doi.org/10.1101/2022.01.02.474723
|
|
Hydroxyl radical footprinting analysis of a human haptoglobin-hemoglobin complex
|
Loginov, D.S.; Fiala, J.; Novak, P. et al.
|
Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 2022, 1870
|
https://doi.org/10.1016/j.bbapap.2021.140735
|
|
Structural amyloid plaque polymorphism is associated with distinct lipid accumulations revealed by trapped ion mobility mass spectrometry imaging
|
Michno, W.; Wehrli, P.M.; Hopf, C. et al.
|
Journal of Neurochemistry 2021
|
https://doi.org/10.1111/jnc.15557
|
|
A druggable addiction to de novo pyrimidine biosynthesis in diffuse midline glioma
|
Pal, S.; Kaplan, J.P. et al.
|
preprint; Cancer Biology 2021
|
https://doi.org/10.1101/2021.11.30.470644
|
|
De Novo Pyrimidine Synthesis is a Targetable Vulnerability in IDH Mutant Glioma
|
Shi, D.D.; Savani, M.R. et al.
|
preprint; Cancer Biology 2021
|
https://doi.org/10.1101/2021.11.30.470443
|
|
Antimicrobial Peptide BCp12 Inhibits Staphylococcus aureus Growth by Altering Lysine Malonylation Levels in the Arginine Synthesis Pathway
|
Shi, Y.; Li, Y. et al.
|
J. Agric. Food Chem. 2021
|
https://doi.org/10.1021/acs.jafc.1c05894
|
|
Application of LC-MS/MS with ion mobility for chemical analysis of propolis extracts with antimicrobial potential
|
Sofrenic, I.; Ljujic, J. et al.
|
J Serb Chem Soc 2021, 86–86
|
https://doi.org/10.2298/JSC210812086S
|
|
Association of Complement and MAPK Activation With SARS-CoV-2–Associated Myocardial Inflammation
|
Weckbach, L.T.; Schweizer, L.; Mann, M. et al.
|
JAMA Cardiol 2021
|
https://doi.org/10.1001/jamacardio.2021.5133
|
|
Investigation of Effects of the Spectral Library on Analysis of diaPASEF Data
|
Wen, C.; Gan, G. et al.
|
J. Proteome Res. 2021
|
https://doi.org/10.1021/acs.jproteome.1c00899
|
|
The effect of lipocalin-2 (LCN2) on apoptosis: a proteomics analysis study in an LCN2 deficient mouse model
|
Wu, D.; Wang, X. et al.
|
BMC Genomics 2021, 22, 892
|
https://doi.org/10.1186/s12864-021-08211-y
|
|
Multifunctional exosome-mimetics for targeted anti-glioblastoma therapy by manipulating protein corona
|
Wu, J.-Y.; Li, Y.-J. et al.
|
J Nanobiotechnol 2021, 19, 405
|
https://doi.org/10.1186/s12951-021-01153-3
|
|
Ultrasensitive Trace Sample Proteomics Unraveled the Protein Remodeling during Mesenchymal–Amoeboid Transition
|
Yang, S.; Xiong, Y. et al.
|
Anal. Chem. 2021
|
https://doi.org/10.1021/acs.analchem.1c03212
|
|
Mitochondrial C1qbp promotes differentiation of effector CD8 + T cells via metabolic-epigenetic reprogramming
|
Zhai, X.; Liu, K. et al.
|
Sci. Adv. 2021, 7
|
https://doi.org/10.1126/sciadv.abk0490
|
|
Effects of dietary selenium on immune function of spleen in mice
|
Zhang, X.; Zhang, L. et al.
|
Journal of Functional Foods 2022, 89
|
https://doi.org/10.1016/j.jff.2021.104914
|
|
Identifying carbohydrate-active enzymes of Cutaneotrichosporon oleaginosus using systems biology
|
Fuchs, T.; Melcher, F. et al.
|
Microb Cell Fact 2021, 20, 205
|
https://doi.org/10.1186/s12934-021-01692-2
|
|
Stability of proteins encapsulated in Michael‐type addition polyethylene glycol hydrogels
|
Ghassemi, Z.; Ruesing, S. et al.
|
Biotechnol Bioeng 2021, 118, 4840–4853
|
https://doi.org/10.1002/bit.27949
|
|
UPLC-MS/MS analysis and biological activity of the potato cyst nematode hatching stimulant, solanoeclepin A, in the root exudate of Solanum spp
|
Guerrieri, A.; Floková, K. et al.
|
Planta 2021, 254, 112
|
https://doi.org/10.1007/s00425-021-03766-2
|
|
Comparative Analysis of Dental Pulp and Periodontal Stem Cells: Differences in Morphology, Functionality, Osteogenic Differentiation and Proteome
|
Kotova, A.V.; Lobov, A.A. et al.
|
Biomedicines 2021, 9, 1606
|
https://doi.org/10.3390/biomedicines9111606
|
|
Urinary peptidomics reveals proteases involved in idiopathic membranous nephropathy
|
Lin, B.; Liu, J. et al.
|
BMC Genomics 2021, 22, 852
|
https://doi.org/10.1186/s12864-021-08155-3
|
|
Proteomic and lipidomic profiling of demyelinating lesions identifies fatty acids as modulators in lesion recovery
|
Penkert, H.; Bertrand, A. et al.
|
Cell Reports 2021, 37
|
https://doi.org/10.1016/j.celrep.2021.109898
|
|
Effect of age on the vascular proteome in middle cerebral arteries and mesenteric resistance arteries in mice
|
Rabaglino, M.B.; Wakabayashi, M. et al.
|
Mechanisms of Ageing and Development 2021, 200
|
https://doi.org/10.1016/j.mad.2021.111594
|
|
Multilayered regulation of autophagy by the Atg1 kinase orchestrates spatial and temporal control of autophagosome formation
|
Schreiber, A.; Collins, B.C.; Aebersold, R. et al.
|
Molecular Cell 2021, S109727652100931X
|
https://doi.org/10.1016/j.molcel.2021.10.024
|
|
Systematic proteomics analysis of lysine acetylation reveals critical features of placental proteins in pregnant women with preeclampsia
|
Shangguan, Y.; Wang, Y. et al.
|
J Cell Mol Med 2021, 25, 10614–10626
|
https://doi.org/10.1111/jcmm.16997
|
|
Noncovalently Tagged Gas Phase Complex Ions for Screening Unknown Contaminant Metabolites in Plants
|
Shen, M.; Gong, X. et al.
|
Anal. Chem. 2021, 93, 14929–14933
|
https://doi.org/10.1021/acs.analchem.1c03145
|
|
Multiomics approach reveals a role of translational machinery in shaping maize kernel amino acid composition
|
Shrestha, V.; Yobi, A. et al.
|
Plant Physiology 2021
|
https://doi.org/10.1093/plphys/kiab390
|
|
A preliminary study of KAT2A on cGAS-related immunity in inflammation amplification of systemic lupus erythematosus
|
Tang, Y.; Li, X. et al.
|
Cell Death Dis 2021, 12, 1036
|
https://doi.org/10.1038/s41419-021-04323-1
|
|
4D-quantitative proteomics signature of asthenozoospermia and identification of extracellular matrix protein 1 as a novel biomarker for sperm motility
|
Yang, J.; Liu, Q. et al.
|
Mol. Omics 2021
|
https://doi.org/10.1039/D1MO00257K
|
|
Proteomic Analysis of Chrysanthemum Lateral Buds after Removing Apical Dominance Based on Label-Free Technology
|
Zheng, S.; Song, J. et al.
|
Phyton 2022, 91, 525–539
|
https://doi.org/10.32604/phyton.2022.017629
|
|
Red Blood Cell Proteasome in Beta-Thalassemia Trait: Topology of Activity and Networking in Blood Bank Conditions
|
Anastasiadi, A.T.; Tzounakas, V.L. et al.
|
Membranes 2021, 11, 716
|
https://doi.org/10.3390/membranes11090716
|
|
Proteomic Analysis of the Functional Inward Rectifier Potassium Channel (Kir) 2.1 Reveals Several Novel Phosphorylation Sites
|
Brown, K.A.; Anderson, C.; Ge, Y. et al.
|
Biochemistry 2021
|
https://doi.org/10.1021/acs.biochem.1c00555
|
|
Image-guided MALDI mass spectrometry for high-throughput single-organelle characterization
|
Castro, D.C.; Xie, Y.R.; Sweedler, J.V. et al.
|
Nat Methods 2021, 18, 1233–1238
|
https://doi.org/10.1038/s41592-021-01277-2
|
|
Cathepsin C Is Involved in Macrophage M1 Polarization via p38/MAPK Pathway in Sudden Cardiac Death
|
Dai, J.; Liu, J. et al.
|
Cardiovascular Therapeutics 2021, 1–12
|
https://doi.org/10.1155/2021/6139732
|
|
Cytokine exposure mediates transcriptional activation of the orphan nuclear receptor Nur77 in hematopoietic cells
|
di Martino, O.; Niu, H. et al.
|
Journal of Biological Chemistry 2021, 297, 101240
|
https://doi.org/10.1016/j.jbc.2021.101240
|
|
Plasmodium sporozoites require the protein B9 to invade hepatocytes
|
Fernandes, P.; Loubens, M. et al.
|
preprint; Microbiology 2021
|
https://doi.org/10.1101/2021.10.25.465731
|
|
Musarin, a novel protein with tyrosine kinase inhibitory activity from Trametes versicolor, accepted inhibits colorectal cancer stem cell growth
|
He, Y.; Liu, S. et al.
|
Biomedicine & Pharmacotherapy 2021, 144, 112339
|
https://doi.org/10.1016/j.biopha.2021.112339
|
|
Translational activators and mitoribosomal isoforms cooperate to mediate mRNA-specific translation in Schizosaccharomyces pombe mitochondria
|
Herbert, C.J.; Labarre-Mariotte, S. et al.
|
Nucleic Acids Research 2021
|
https://doi.org/10.1093/nar/gkab789
|
|
Identification of proteins associated with Fusarium crown rot resistance in wheat using label-free quantification analysis
|
Jin, J.; Duan, S. et al.
|
Journal of Integrative Agriculture 2021, 20, 3209–3221
|
https://doi.org/10.1016/S2095-3119(20)63573-0
|
|
Cell-surface tethered promiscuous biotinylators enable small-scale surface proteomics of human exosomes
|
Kirkemo, L.L.; Elledge, S.K. et al.
|
preprint; Biochemistry 2021
|
https://doi.org/10.1101/2021.09.22.461393
|
|
Loss of the AMD-associated B3GLCT gene affects glycosylation of TSP1 without impairing secretion in retinal pigment epithelial cells 27
|
Lauwen, S.
|
|
https://doi.org/10.1016/j.exer.2021.108798
|
|
Effects of Tartary Buckwheat Protein on Gut Microbiome and Plasma Metabolite in Rats with High-Fat Diet
|
Liu, J.; Song, Y. et al.
|
Foods 2021, 10
|
https://doi.org/10.3390/foods10102457
|
|
Tyrosine phosphorylation of DEPTOR functions as a molecular switch to activate mTOR signaling
|
Gagné, L.; Morin, N. et al.
|
Journal of Biological Chemistry 2021, 297
|
https://doi.org/10.1016/j.jbc.2021.101291
|
|
Developing a mechanically matched decellularized spinal cord scaffold for the in situ matrix-based neural repair of spinal cord injury
|
Ma, Y.; Shi, H. et al.
|
Biomaterials 2021, 279
|
https://doi.org/10.1016/j.biomaterials.2021.121192
|
|
Heading towards a dead end: The role of DND1 in germ line differentiation of human iPSCs
|
Mall, E.M.; Lecanda, A. et al.
|
PLoS ONE 2021, 16
|
https://doi.org/10.1371/journal.pone.0258427
|
|
The social architecture of an in-depth cellular protein interactome
|
Michaelis, A.C.; Brunner, A.-D.; Mann, M. et al.
|
preprint; Systems Biology 2021
|
https://doi.org/10.1101/2021.10.24.465633
|
|
Differential Brain and Cerebrospinal Fluid Proteomic Responses to Acute Prenatal Endotoxin Exposure
|
Muk, T.; Stensballe, A. et al.
|
preprint; In Review 2021
|
https://doi.org/10.21203/rs.3.rs-910516/v1
|
|
Genome-Wide Analyses of Proteome and Acetylome in Zymomonas mobilis Under N2-Fixing Condition
|
Nisar, A.; Gongye, X. et al.
|
Front. Microbiol. 2021, 12
|
https://doi.org/10.3389/fmicb.2021.740555
|
|
Exploration of Proteomics Analysis of Crop Milk in Pigeons ( Columba livia ) during the Lactation Period
|
Shao, Y.; Ma, W. et al.
|
ACS Omega 2021, 6, 27726–27736
|
https://doi.org/10.1021/acsomega.1c02977
|
|
A stress-reduced passaging technique improves the viability of human pluripotent cells
|
Takahashi, K.; Okubo, C. et al.
|
preprint; Cell Biology 2021
|
https://doi.org/10.1101/2021.10.12.464142
|
|
YY1 lactylation in microglia promotes angiogenesis through transcription activation-mediated upregulation of FGF2
|
Wang, X.; Fan, W. et al.
|
preprint; In Review 2021
|
https://doi.org/10.21203/rs.3.rs-910016/v1
|
|
Simplifying MS1 and MS2 spectra to achieve lower mass error, more dynamic range, and higher peptide identification confidence on the Bruker timsTOF Pro
|
Wilding-McBride, D.; Dagley, L.F. et al.
|
Bioinformatics 2021
|
https://doi.org/10.1101/2021.10.18.464737
|
|
Global Profiling of Protein Lysine Malonylation in Eucommia ulmoides Leaves Reveals Its Role in Photosynthesis and Metabolism
|
Yao, X.; Shen, C. et al.
|
Plant Mol Biol Rep 2021
|
https://doi.org/10.1007/s11105-021-01319-1
|
|
PRM-LIVE with Trapped Ion Mobility Spectrometry and Its Application in Selectivity Profiling of Kinase Inhibitors
|
Zhu, H.; Ficarro, S.B.; Marto, J.A et al.
|
Anal. Chem. 2021, 93, 13791–13799
|
https://doi.org/10.1021/acs.analchem.1c02349
|
|
Integration of Transcriptomic And Proteomic Analyses Reveals Several Levels of Metabolic Regulation In The Excess Starch And Early Senescent Leaf Mutant lses1 In Rice
|
Chen, Z.; Wang, Y. et al.
|
preprint; In Review 2021
|
https://doi.org/10.21203/rs.3.rs-805903/v1
|
|
Spectrum graph-based de-novo sequencing algorithm MaxNovo achieves high peptide identification rates in collisional dissociation MS/MS spectra
|
Gutenbrunner, P.; Kyriakidou, P. et al.
|
preprint; Bioinformatics 2021
|
https://doi.org/10.1101/2021.09.04.458985
|
|
Upregulation of α enolase (ENO1) crotonylation in colorectal cancer and its promoting effect on cancer cell metastasis
|
Hou, J.-Y.; Cao, J. et al.
|
Biochemical and Biophysical Research Communications 2021, 578, 77–83
|
https://doi.org/10.1016/j.bbrc.2021.09.027
|
|
Characterization of the microRNA Transcriptomes and Proteomics of Cochlea Tissue-derived Small Extracellular Vesicles From Different Age of Mice After Birth
|
Jiang, P.; Ma, X. et al.
|
preprint; In Review 2021
|
https://doi.org/10.21203/rs.3.rs-823336/v1
|
|
Drone honey bees (Apis mellifera ) are disproportionately sensitive to abiotic stressors despite expressing high levels of stress response proteins
|
McAfee, A.; Metz, B. et al.
|
preprint; Cell Biology 2021
|
https://doi.org/10.1101/2021.08.28.456261
|
|
Evaluation of a Bruker timsTOF Pro for Native Mass Spectrometry
|
Panczyk, E.; Snyder, D. et al.
|
preprint; Chemistry 2021
|
https://doi.org/10.33774/chemrxiv-2021-qr78t
|
|
Identification of potential autoantigens in anti-CCP-positive and anti-CCP-negative rheumatoid arthritis using citrulline-specific protein arrays
|
Poulsen, T.B.G.; Damgaard, D.; Stensballe, A. et al.
|
Sci Rep 2021, 11, 17300
|
https://doi.org/10.1038/s41598-021-96675-z
|
|
Thiol and Disulfide Containing Vancomycin Derivatives Against Bacterial Resistance and Biofilm Formation
|
Shchelik, I.S.; Gademann, K.
|
preprint; Microbiology 2021
|
https://doi.org/10.1101/2021.08.23.457343
|
|
Use of PASEF for Accelerated Protein and De Novo Sequencing with High Data Quality
|
Suckau, D.; Evers, W.; Beck, A. et al.
|
2022, In: Houen, G. (Ed.), Therapeutic Antibodies, Methods in Molecular Biology. Springer US, New York, NY, pp. 207–217
|
https://doi.org/10.1007/978-1-0716-1450-1_12
|
|
Accurate and automated high-coverage identification of chemically cross-linked peptides with MaxLynx
|
Yılmaz, Ş.; Busch, F.; Cox, J. et al.
|
preprint; Bioinformatics 2021
|
https://doi.org/10.1101/2021.08.26.457759
|
|
Ecological Adaptation and Succession of Human Fecal Microbial Communities in an Automated In Vitro Fermentation System
|
Gnanasekaran, T.; Assis Geraldo, J. et al.
|
mSystems 2021
|
https://doi.org/10.1128/mSystems.00232-21
|
|
Complementing Matrix-Assisted Laser Desorption Ionization-Mass Spectrometry Imaging with Chromatography Data for Improved Assignment of Isobaric and Isomeric Phospholipids Utilizing Trapped Ion Mobility-Mass Spectrometry
|
Helmer, P.O.; Nordhorn, I.D.; Zubeil, F. et al.
|
Anal. Chem. 2021, 93, 2135–2143
|
https://doi.org/10.1021/acs.analchem.0c03942
|
|
Salivary proteome of aphthous stomatitis reveals the participation of vitamin metabolism, nutrients, and bacteria
|
Hernández-Olivos, R.; Muñoz, M. et al.
|
preprint; Dentistry and Oral Medicine 2021
|
https://doi.org/10.1101/2021.08.01.21261411
|
|
Darwin’s bark spider shares a spidroin repertoire with Caerostris extrusa but achieves extraordinary silk toughness through gene expression
|
Kono, N.; Ohtoshi, R. et al.
|
preprint; Molecular Biology 2021
|
https://doi.org/10.1101/2021.07.16.452619
|
|
High-Throughput Multi-attribute Analysis of Antibody-Drug Conjugates Enabled by Trapped Ion Mobility Spectrometry and Top-Down Mass Spectrometry
|
Larson, E.J.; Roberts, D.S.; Ge, Y. et al.
|
Anal. Chem. 2021, 93, 10013–10021
|
https://doi.org/10.1021/acs.analchem.1c00150
|
|
Comparative Proteomic Analysis to Investigate the Pathogenesis of Oral Adenoid Cystic Carcinoma
|
Li, W.; Zhang, Q. et al.
|
ACS Omega 2021, 6, 18623–18634
|
https://doi.org/10.1021/acsomega.1c01270
|
|
Mode of action of Elasnin as biofilm-formation eradicator of Methicillin-Resistant Staphylococcus aureus
|
Long, L.; Sulaiman, J.E. et al.
|
preprint; In Review 2021
|
https://doi.org/10.21203/rs.3.rs-752510/v1
|
|
Trapped Ion Mobility Spectrometry (TIMS) and Parallel Accumulation – Serial Fragmentation (PASEF) in Proteomics
|
Meier, F.; Park, M.A.; Mann, M.
|
Molecular & Cellular Proteomics 2021, 100138
|
https://doi.org/10.1016/j.mcpro.2021.100138
|
|
Investigating Closed Room Conspirators of Posttraumatic Inflammatory Response: Multi- Omics Profiles of Exosomes Derived from Intestinal Epithelial Cells Under Ischemia Reperfusion Injury
|
Senda, A.; Kojima, M. et al.
|
preprint; In Review 2021
|
https://doi.org/10.21203/rs.3.rs-792334/v1
|
|
AlphaTims: Indexing trapped ion mobility spectrometry – time of flight data for fast and easy accession and visualization
|
Willems, S.; Voytik, E.; Mann, M. et al.
|
preprint; Bioinformatics 2021
|
https://doi.org/10.1101/2021.07.27.453933
|
|
Integrative proteomics and phosphoproteomics reveals phosphorylation networks involved in the maintenance and expression of embryogenic competence in sugarcane callus
|
Xavier, L.R.; Almeida, F.A. et al.
|
preprint; Plant Biology 2021
|
https://doi.org/10.1101/2021.07.22.453415
|
|
Integrative proteomic and metabolomic analyses reveal the mechanism by which bismuth enables Helicobacter pylori eradication
|
Yao, X.; Xiao, S.; Zhou, L.
|
Helicobacter 2021
|
https://doi.org/10.1111/hel.12846
|
|
Comparative analyses of the venom components in the salivary gland transcriptomes and saliva proteomes of some heteropteran insects
|
Yoon, K.A.; Kim, W. et al.
|
Insect Science 2021, 1744-7917.12955
|
https://doi.org/10.1111/1744-7917.12955
|
|
MaxDIA enables library-based and library-free data-independent acquisition proteomics
|
Sinitcyn, P.; Hamzeiy, H.; Cox, J. et al.
|
Nat Biotechnol, 2021
|
https://doi.org/10.1038/s41587-021-00968-7
|
|
A Multi-omics Strategy Enabled by Sequential Metabolomics and Proteomics for Human Pluripotent Stem Cell-derived Cardiomyocytes
|
Bayne, E.F.; Simmons, A.D.; Ge, Y. et al.
|
preprint; Systems Biology, 2021
|
https://doi.org/10.1101/2021.06.23.449630
|
|
Locality-sensitive hashing enables signal classification in high-throughput mass spectrometry raw data at scale
|
Bob, K.; Teschner, D.; Tenzer, S. et al.
|
preprint; Bioinformatics, 2021
|
https://doi.org/10.1101/2021.07.01.450702
|
|
Fragmentation and Mobility Separation of Peptide and Protein Ions in a Trapped-Ion Mobility Device
|
Borotto, N.B.; Graham, K.A.
|
Anal. Chem., 2021
|
https://doi.org/10.1021/acs.analchem.1c01188
|
|
Metabolomic Profiling of Human Urine Samples Using LC-TIMS-QTOF Mass Spectrometry
|
Di Poto, C.; Tian, X. et al.
|
J. Am. Soc. Mass Spectrom., 2021
|
https://doi.org/10.1021/jasms.0c00467
|
|
BCAR1 plays critical roles in the formation and immunoevasion of invasive circulating tumor cells in lung adenocarcinoma
|
Mao, C.-G.; Jiang, S. et al.
|
Int. J. Biol. Sci., 2021, 17, 2461–2475
|
https://doi.org/10.7150/ijbs.61790
|
|
The differences of muscle proteins between neon flying squid (Ommastrephes bartramii) and jumbo squid (Dosidicus gigas) mantles via physicochemical and proteomic analyses
|
Shui, S.; Yao, H. et al.
|
Food Chemistry, 2021, 364, 130374
|
https://doi.org/10.1016/j.foodchem.2021.130374
|
|
Global profiling of RNA-binding protein target sites by LACE-seq
|
Su, R.; Fan, L.-H.; Wong, C.C.L et al.
|
Nat Cell Biol, 2021, 23, 664–675
|
https://doi.org/10.1038/s41556-021-00696-9
|
|
Physiological and Proteomic Responses of Pitaya to PEG-Induced Drought Stress
|
Wang, A.; Ma, C. et al.
|
Agriculture, 2021, 11, 632
|
https://doi.org/10.3390/agriculture11070632
|
|
A cell-sorting-based nano-scale pipeline for cell-type specific proteomics in plants
|
Wang, H.; Li, R. et al.
|
preprint; Plant Biology, 2021
|
https://doi.org/10.1101/2021.07.06.451220
|
|
Proteomics and bioinformatics reveal insights into neuroinflammation in the acute to subacute phases in rat models of spinal cord contusion injury
|
Yao, X.; Liu, Z. et al.
|
FASEB, 2021, 35
|
https://doi.org/10.1096/fj.202100081RR
|
|
Nuclear receptors NHR-49 and NHR-79 promote peroxisome proliferation to compensate for aldehyde dehydrogenase deficiency in C. elegans
|
Zeng, L.; Li, X. et al.
|
PLoS Genet, 2021, 17
|
https://doi.org/10.1371/journal.pgen.1009635
|
|
Multi-omics analyses of human colorectal cancer revealed three mitochondrial genes potentially associated with poor outcomes of patients
|
Zhang, W.; Lin, L. et al.
|
J Transl Med, 2021, 19, 273
|
https://doi.org/10.1186/s12967-021-02939-7
|
|
Integrative multiplatform-based molecular profiling of human colorectal cancer reveals proteogenomic alterations underlying mitochondrial inactivation
|
Zhang, W.; Tang, D. et al.
|
Am J Cancer Res, 2021, 11, 2893–2910
|
https://pubmed.ncbi.nlm.nih.gov/34249434
|
|
Ultrafast and Reproducible Proteomics from Small Amounts of Heart Tissue Enabled by Azo and timsTOF Pro
|
Aballo, T.J.; Roberts, D.S.; Ge, Y. et al.
|
preprint; Systems Biology, 2021
|
https://doi.org/10.1101/2021.05.24.445470
|
|
DeGlyPHER: an ultrasensitive method for analysis of viral spike N-glycoforms
|
Baboo, S.; Diedrich, J.K.; Yates, J.R. et al.
|
preprint; Biochemistry, 2021
|
https://doi.org/10.1101/2021.05.13.444041
|
|
Synthetic Antigen Presenting cells reveal the diversity and functional specialisation of extracellular vesicles composing the fourth signal of T cell immunological synapses
|
Céspedes, P.F.; Jainarayanan, A.; Fischer, R. et al.
|
preprint; Immunology, 2021
|
https://doi.org/10.1101/2021.05.29.445691
|
|
Triangulation of microbial fingerprinting in anaerobic digestion reveals consistent fingerprinting profiles
|
De Vrieze, J.; Heyer, R. et al.
|
preprint; Bioengineering, 2021
|
https://doi.org/10.1101/2021.05.28.446109
|
|
A novel immunopeptidomic-based pipeline for the generation of personalized oncolytic cancer vaccines
|
Feola, S.; Chiaro, J.; Lehtiö, J. et al.
|
preprint; Cancer Biology, 2021
|
https://doi.org/10.1101/2021.06.08.447483
|
|
PeptiCHIP: a novel microfluidic-based chip platform for tumour antigen landscape identification
|
Feola, S.; Haapala, M.; Lehtiö, J. et al.
|
preprint; In Review, 2021
|
https://doi.org/10.21203/rs.3.rs-156531/v1
|
|
Immunomodulation of T Helper Cells by Tumor Microenvironment in Oral Cancer Is Associated With CCR8 Expression and Rapid Membrane Vitamin D Signaling Pathway
|
Fraga, M.; Yáñez, M. et al.
|
Front. Immunol., 2021, 12
|
https://doi.org/10.3389/fimmu.2021.643298
|
|
Two-dimensional guanidinium-based covalent organic nanosheets for controllable recognition and specific enrichment of global/multi-phosphopeptides
|
He, Y.; Huang, W. et al.
|
Talanta, 2021, 233
|
https://doi.org/10.1016/j.talanta.2021.122497
|
|
High resolution analysis of proteome dynamics during Bacillus subtilis sporulation
|
Tu, Z.; Dekker, H.L.; Kramer, G. et al.
|
preprint; Microbiology, 2021
|
https://doi.org/10.1101/2021.05.20.445030
|
|
LRRC23 is a conserved component of the radial spoke that is necessary for sperm motility and male fertility in mice
|
Zhang, X.; Sun, J. et al.
|
preprint; Cell Biology, 2021
|
https://doi.org/10.1101/2021.06.01.446532
|
|
Ribosome-Inactivating Proteins of Bougainvillea Glabra Uncovered Polymorphism and Active Site Divergence
|
Lin, Y.; Xu, L. et al.
|
Toxins 2021, 13 (5), 331
|
https://doi.org/10.3390/toxins13050331
|
|
Integrated Phospho-Proteogenomic and Single-Cell Transcriptomic Analysis of Meningiomas Establishes Robust Subtyping and Reveals Subtype-Specific Immune Invasion
|
Blume, C.; Dogan, H.; Mann, M. et al.
|
preprint; Genomics, 2021
|
https://doi.org/10.1101/2021.05.11.443369
|
|
Tetrahydrocurcumin Ameliorates Alzheimer’s Pathological Phenotypes by Inhibition of Microglial Cell Cycle Arrest and Apoptosis via Ras/ERK Signaling
|
Xiao, Y.; Dai, Y. et al.
|
Biomedicine & Pharmacotherapy 2021, 139
|
https://doi.org/10.1016/j.biopha.2021.111651
|
|
Hypoxic Acclimation Improves Cardiac Redox Homeostasis and Protects Heart against Ischemia-Reperfusion Injury through Upregulation of O-GlcNAcylation
|
Ou, W.; Liang, Y et al.
|
Redox Biology 2021, 101994
|
https://doi.org/10.1016/j.redox.2021.101994
|
|
DNA Binding Mode, Photophysical Properties and Recommendations for Use of SYBR Gold
|
Kolbeck, P. J.; Vanderlinden, W. et al.
|
Molecular Structure, Nucleic Acids Research 2021, gkab265
|
https://doi.org/10.1093/nar/gkab265
|
|
Comprehensive Plasma Proteomics by Orthogonal Protease Digestion
|
Fossati, A.; Richards, A. L. et al.
|
preprint; Systems Biology, 2021
|
https://doi.org/10.1101/2021.04.28.441706
|
|
Multicomponent Nature Underlies the Extraordinary Mechanical Properties of Spider Dragline Silk
|
Kono, N.; Nakamura, H. et al.
|
preprint; Molecular Biology, 2021
|
https://doi.org/10.1101/2021.04.22.441049
|
|
MiRNAs and Their Gene Targets—A Clue to Differentiate Pregnancies with Small for Gestational Age Newborns, Intrauterine Growth Restriction, and Preeclampsia
|
Timofeeva, A. V.; Fedorov, I. S. et al.
|
Diagnostics 2021, 11 (4), 729
|
https://doi.org/10.3390/diagnostics11040729
|
|
The Autophagy Receptor TAX1BP1 (T6BP) Is a Novel Player in Antigen Presentation by MHC-II Molecules
|
Pereira, M.; Richetta, C.; Pionneau, C. et al.
|
preprint; Immunology, 2021
|
https://doi.org/10.1101/2021.04.21.440798
|
|
Conformational Interconversion of MLKL and Disengagement from RIPK3 Precede Cell Death by Necroptosis
|
Garnish, S. E.; Meng, Y. et al.
|
Nat Commun 2021, 12 (1), 2211
|
https://doi.org/10.1038/s41467-021-22400-z
|
|
Comprehensive Analysis of Lysine Succinylation in Paper Mulberry (Broussonetia Papyrifera)
|
Dong, Y.; Li, P. et al.
|
First BMC Genomics 2021, 22 (1), 255
|
https://doi.org/10.1186/s12864-021-07567-5
|
|
Benefits of Ion Mobility Separation and Parallel Accumulation–Serial Fragmentation Technology on TimsTOF Pro for the Needs of Fast Photochemical Oxidation of Protein Analysis
|
Loginov, D. S.; Fiala, J. et al.
|
ACS Omega 2021, 6 (15), 10352–10361
|
https://doi.org/10.1021/acsomega.1c00732
|
|
SLPI Is a Critical Mediator That Controls PTH-Induced Bone Formation
|
Morimoto, A.; Kikuta, J. et al.
|
Nat Commun 2021, 12 (1), 2136
|
https://doi.org/10.1038/s41467-021-22402-x
|
|
Analysis of Peptide Stereochemistry in Single Cells by Capillary Electrophoresis–Trapped Ion Mobility Spectrometry Mass Spectrometry
|
Mast, D. H.; Liao, H.-W.; Sweedler, J. V. et al.
|
Anal. Chem. 2021, 93 (15), 6205–6213
|
https://doi.org/10.1021/acs.analchem.1c00445
|
|
Simplified High-Throughput Methods for Deep Proteome Analysis on the TimsTOF Pro
|
Sandow, J. J.; Infusini, G.; Webb, A. I. et al.
|
preprint; Biochemistry, 2019
|
https://doi.org/10.1101/657908
|
|
Ti4+-Immobilized Hierarchically Porous Zirconium-Organic Frameworks for Highly Efficient Enrichment of Phosphopeptides
|
He, Y.; Zheng, Q. et al.
|
Microchim Acta 2021, 188 (5), 150
|
https://doi.org/10.1007/s00604-021-04760-x
|
|
Trapped Ion Mobility Spectrometry Reduces Spectral Complexity in Mass Spectrometry Based Workflow
|
Charkow, J.; Röst, H. L.
|
preprint; Bioinformatics, 2021
|
https://doi.org/10.1101/2021.04.01.438072
|
|
Elongation Factor EEF2 Kinase and Autophagy Jointly Promote Survival of Cancer Cells
|
Lenchine, R. V.; Rao, S. R. et al.
|
Biochemical Journal 2021, 478 (8), 1547–1569
|
https://doi.org/10.1042/BCJ20210126
|
|
Proteome-Scale Endogenous Tagging Enables the Cartography of Human Cellular Organization
|
Cho, N. H.; Cheveralls, K. C.; Mann, M. et al.
|
OpenCell; preprint; Cell Biology, 2021
|
https://doi.org/10.1101/2021.03.29.437450
|
|
Hippocampal Proteomic Analysis Reveals Activation of Necroptosis and Ferroptosis in a Mouse Model of Chronic Unpredictable Mild Stress-Induced Depression
|
Huang, Y.; Zhu, L. et al.
|
Behavioural Brain Research 2021, 407, 113261
|
https://doi.org/10.1016/j.bbr.2021.113261
|
|
Cross-Linking/Mass Spectrometry Combined with Ion Mobility on a TimsTOF Pro Instrument for Structural Proteomics
|
Ihling, C. H.; Piersimoni, L. et al.
|
preprint; Biochemistry, 2021
|
https://doi.org/10.1101/2021.03.26.437136
|
|
Temporarily Epigenetic Repression in Bergmann Glia Regulates the Migration of Granule Cells
|
Chen, S.; Zhang, K. et al.
|
Adv. Sci. 2021, 2003164
|
https://doi.org/10.1002/advs.202003164
|
|
Ubiquitin Specific Peptidase 32 Acts as an Oncogene in Epithelial Ovarian Cancer by Deubiquitylating Farnesyl-Diphosphate Farnesyltransferase 1
|
Nakae, A.; Kodama, M. et al.
|
Biochemical and Biophysical Research Communications 2021, 552, 120–127
|
https://doi.org/10.1016/j.bbrc.2021.03.049
|
|
Open and Easy Access to TimsTOF Raw Data
|
Łącki, M. K.; Startek, M. P. et al.
|
OpenTIMS, TimsPy, and TimsR: J. Proteome Res. 2021, 20 (4), 2122–2129
|
https://doi.org/10.1021/acs.jproteome.0c00962
|
|
High Sensitivity Dia-PASEF Proteomics with DIA-NN and FragPipe
|
Demichev, V.; Yu, F. et al.
|
preprint; Bioinformatics, 2021
|
https://doi.org/10.1101/2021.03.08.434385
|
|
Packed Red Blood Cells Inhibit T-Cell Activation via ROS-Dependent Signaling Pathways
|
Gerner, M. C.; Bileck, A. et al.
|
Journal of Biological Chemistry 2021, 296, 100487
|
https://doi.org/10.1016/j.jbc.2021.100487
|
|
Critical Assessment of Metaproteome Investigation (CAMPI): A Multi-Lab Comparison of Established Workflows
|
Van Den Bossche, T.; Kunath, B. J. et al.
|
preprint; Microbiology, 2021
|
https://doi.org/10.1101/2021.03.05.433915
|
|
A Ciliopathy Complex Builds Distal Appendages to Initiate Ciliogenesis
|
Kumar, D.; Rains, A. et al.
|
preprint; Cell Biology, 2021
|
https://doi.org/10.1101/2021.03.01.433418
|
|
Global Proteomic Analysis of Extracellular Matrix in Mouse and Human Brain Highlights Relevance to Cerebrovascular Disease
|
Pokhilko, A.; Brezzo, G. et al.
|
Cereb Blood Flow Metab 2021, 0271678X2110043
|
https://doi.org/10.1177/0271678X211004307
|
|
Deep Learning the Collisional Cross Sections of the Peptide Universe from a Million Experimental Values
|
Meier, F.; Köhler, N. D. et al.
|
Nat Commun 2021, 12 (1), 1185
|
https://doi.org/10.1038/s41467-021-21352-8
|
|
Comparison of Lipidome Profiles of Caenorhabditis Elegans—Results from an Inter-Laboratory Ring Trial
|
Spanier, B.; Laurençon, A. et al.
|
Metabolomics 2021, 17 (3), 25
|
https://doi.org/10.1007/s11306-021-01775-6
|
|
Insight into the Collagen-Degrading Activity of a Serine Protease in the Latex of Ficus Carica Cultivar Masui Dauphine
|
Nishimura, K.; Higashiya, K. et al.
|
Bioscience, Biotechnology, and Biochemistry 2021, 85 (5), 1147–1156
|
https://doi.org/10.1093/bbb/zbab025
|
|
Genome-Wide CRISPRi Screening Identifies OCIAD1 as a Prohibitin Client and Regulatory Determinant of Mitochondrial Complex III Assembly in Human Cells
|
Vasseur, M. L.; Friedman, J. R. et al.
|
preprint; Cell Biology, 2021
|
https://doi.org/10.1101/2021.02.16.431450
|
|
KCTD19 Associates with ZFP541 and HDAC1 and Is Required for Meiotic Exit in Male Mice
|
Oura, S.; Koyano, T. et al.
|
preprint; Developmental Biology, 2021
|
https://doi.org/10.1101/2021.02.12.430913
|
|
Methylation of KRAS at Lysine 182 and 184 by SETD7 Promotes KRAS Degradation
|
Chiang, C.; Xiao, T. et al.
|
preprint; Cancer Biology, 2021
|
https://doi.org/10.1101/2021.02.10.429309
|
|
A Simple and Robust SDS-Aided Sample Preparation Method for Proteomic Research
|
Gan, G.; Xu, X. et al.
|
SCASP: Molecular & Cellular Proteomics 2021, 20, 100051
|
https://doi.org/10.1016/j.mcpro.2021.100051
|
|
Unraveling the Phosphoproteome with Trapped Ion Mobility Spectrometry (TIMS)
|
Ishihama, Y.
|
Drug Discovery World, January 2021
|
|
|
Acute Post-Injury Blockade of Α2δ-1 Calcium Channel Subunits Prevents Pathological Autonomic Plasticity after Spinal Cord Injury
|
Brennan, F. H.; Noble, B. T. et al.
|
Cell Reports 2021, 34 (4), 108667
|
https://doi.org/10.1016/j.celrep.2020.108667
|
|
Visual Proteomics Defines Cell Identity and Heterogeneity
|
Mund, A.; Coscia, F. et al.
|
AI-Driven Deep preprint; Systems Biology, 2021
|
https://doi.org/10.1101/2021.01.25.427969
|
|
2021_timsTOFPRo_Baoding_JIA447非标定量方法分析小麦茎基腐病抗病相关蛋白-1.Pdf
|
JIN, J.; DUAN, S. et al.
|
|
|
|
Octenidine-Based Hydrogel Shows Anti-Inflammatory and Protease-Inhibitory Capacities in Wounded Human Skin
|
Seiser, S.; Janker, L. et al.
|
Sci Rep 2021, 11 (1), 32
|
https://doi.org/10.1038/s41598-020-79378-9
|
|
Crystal Structure of Bacterial Cytotoxic Necrotizing Factor CNF Y Reveals Molecular Building Blocks for Intoxication
|
Chaoprasid, P.; Lukat, P. et al.
|
EMBO J 2021, 40 (4)
|
https://doi.org/10.15252/embj.2020105202
|
|
Water-Soluble Alkaloids Extracted from Aconiti Radix Lateralis Praeparata Protect against Chronic Heart Failure in Rats via a Calcium Signaling Pathway
|
Xu, X.; Xie, X. et al.
|
Biomedicine & Pharmacotherapy 2021, 135, 111184
|
https://doi.org/10.1016/j.biopha.2020.111184
|
|
Ultra-High Sensitivity Mass Spectrometry Quantifies Single-Cell Proteome Changes upon Perturbation
|
Brunner, A.-D.; Thielert, M. et al.
|
preprint; Systems Biology, 2020
|
https://doi.org/10.1101/2020.12.22.423933
|
|
Structure of the Neurotensin Receptor 1 in Complex with β-Arrestin 1
|
Huang, W.; Masureel, M. et al.
|
Nature 2020, 579 (7798), 303–308
|
https://doi.org/10.1038/s41586-020-1953-1
|
|
A CRISPR-Based Genome-Wide Screen for Adipogenesis Reveals New Insights into Mitotic Expansion and Lipogenesis
|
Hilgendorf, K. I.; Johnson, C. T. et al.
|
preprint; Molecular Biology, 2020
|
https://doi.org/10.1101/2020.07.13.201038
|
|
Divergent Molecular Signatures of Regeneration and Fibrosis during Wound Repair
|
Mascharak, S.; desJardins-Park, H. E. et al.
|
preprint; Cell Biology, 2020
|
https://doi.org/10.1101/2020.12.17.423181
|
|
DiaPASEF: Parallel Accumulation–Serial Fragmentation Combined with Data-Independent Acquisition
|
Meier, F.; Brunner, A.-D. et al.
|
Nat Methods 2020, 17 (12), 1229–1236
|
https://doi.org/10.1038/s41592-020-00998-0
|
|
Targeted Proteomics Acquisition on a TIMS-QTOF
|
Lesur, A.; Schmit, P.-O. et al.
|
Highly Multiplexed Anal. Chem. 2020, acs.analchem.0c03180
|
https://doi.org/10.1021/acs.analchem.0c03180
|
|
Identification of Proximal SUMO-Dependent Interactors Using SUMO-ID
|
Barroso-Gomila, O.; Trulsson, F. et al.
|
preprint; Biochemistry, 2020
|
https://doi.org/10.1101/2020.12.28.424528
|
|
In-Depth Proteomic Analysis of Plasmodium Berghei Sporozoites Using Trapped Ion Mobility Spectrometry with Parallel Accumulation-Serial Fragmentation
|
Hamada, S.; Pionneau, C. et al.
|
preprint; Microbiology, 2020
|
https://doi.org/10.1101/2020.11.26.400192
|
|
Licorice Ameliorates Cisplatin-Induced Hepatotoxicity Through Antiapoptosis, Antioxidative Stress, Anti-Inflammation, and Acceleration of Metabolism
|
Man, Q.; Deng, Y. et al.
|
Front. Pharmacol. 2020, 11, 563750
|
https://doi.org/10.3389/fphar.2020.563750
|
|
Multi-Omics Profiling of Living Human Pancreatic Islet Donors Reveals Heterogeneous Beta Cell Trajectories toward Type 2 Diabetes
|
Wigger, L.; Barovic, M. et al.
|
preprint; Bioinformatics, 2020
|
https://doi.org/10.1101/2020.12.05.412338
|
|
Nuclear Receptor NHR-49 Promotes Peroxisome Proliferation to Compensate for Aldehyde Dehydrogenase Deficiency in C. Elegans
|
Zeng, L.; Li, X. et al.
|
preprint; Cell Biology, 2020
|
https://doi.org/10.1101/2020.12.04.411637
|
|
O-Acetylated Chemical Reporters of Glycosylation Can Display Metabolism-Dependent Background Labeling of Proteins but Are Generally Reliable Tools for the Identification of Glycoproteins
|
Darabedian, N.; Yang, B. et al.
|
Front. Chem. 2020, 8, 318
|
https://doi.org/10.3389/fchem.2020.00318
|
|
OP7, a Novel Influenza A Virus Defective Interfering Particle: Production, Purification, and Animal Experiments Demonstrating Antiviral Potential
|
Hein, M. D.; Kollmus, H. et al.
|
Appl Microbiol Biotechnol 2020
|
https://doi.org/10.1007/s00253-020-11029-5
|
|
Serine 165 Phosphorylation of SHARPIN Regulates the Activation of NF-ΚB
|
Thys, A.; Trillet, K. et al.
|
preprint; Immunology, 2020
|
https://doi.org/10.1101/2020.07.02.184085
|
|
The MPK 8‐ TCP 14 Pathway Promotes Seed Germination in Arabidopsis
|
Zhang, W.; Cochet, F. et al.
|
Plant J 2019, 100 (4), 677–692
|
https://doi.org/10.1111/tpj.14461
|
|
The Marine Bivalve Molluscs Pathogen Vibrio Neptunius Produces the Siderophore Amphibactin Which Is Widespread in Molluscs Microbiota
|
Galvis, F.; Ageitos, L. et al.
|
Environ Microbiol 2020, 1462-2920.15312
|
https://doi.org/10.1111/1462-2920.15312
|
|
The Prefoldin Complex Stabilizes the von Hippel-Lindau Protein against Aggregation and Degradation
|
Chesnel, F.; Couturier, A. et al.
|
PLoS Genet 2020, 16 (11), e1009183
|
https://doi.org/10.1371/journal.pgen.1009183
|
|
The Role of Wnt/β-Catenin Pathway Mediators in Aortic Valve Stenosis
|
Khan, K.; Yu, B. et al.
|
Front. Cell Dev. Biol. 2020, 8, 862
|
https://doi.org/10.3389/fcell.2020.00862
|
|
A Cross-Talk between Epithelium and Endothelium Mediates Human Alveolar–Capillary Injury during SARS-CoV-2 Infection
|
Wang, P.; Luo, R. et al.
|
Cell Death Dis 2020, 11 (12), 1042
|
https://doi.org/10.1038/s41419-020-03252-9
|
|
A. ABPP-HT - High-Throughput Activity-Based Profiling of Deubiquitylating Enzyme Inhibitors in a Cellular Context
|
Jones, H.; Heilig, R. et al.
|
Pinto-Fernandez, preprint; Biochemistry, 2020
|
https://doi.org/10.1101/2020.12.10.419499
|
|
Antagonistic Regulation by CPN60A and CLPC1 of TRXL1 That Regulates MDH Activity Leading to Plant Disease Resistance and Thermotolerance
|
Pant, B. D.; Oh, S. et al.
|
Cell Reports 2020, 33 (11), 108512
|
https://doi.org/10.1016/j.celrep.2020.108512
|
|
Pharmacological Targeting of Vacuolar H+-ATPase via Subunit V1G Combats Multidrug-Resistant Cancer
|
Wang, Y.; Zhang, L. et al.
|
Cell Chemical Biology 2020, 27 (11), 1359-1370.e8
|
https://doi.org/10.1016/j.chembiol.2020.06.011
|
|
Glass Fiber-Supported Hybrid Monolithic Spin Tip for Enrichment of Phosphopeptides from Urinary Extracellular Vesicles
|
Zhang, H.; Deng, Y. et al.
|
Anal. Chem. 2020, 92 (21), 14790–14797
|
https://doi.org/10.1021/acs.analchem.0c03557
|
|
Effect of (R)‐salbutamol on the Switch of Phenotype and Metabolic Pattern in LPS‐induced Macrophage Cells
|
Wang, S.; Liu, F. et al.
|
Cell Mol Med 2020, 24 (1), 722–736
|
https://doi.org/10.1111/jcmm.14780
|
|
Label-Free Quantitative Phosphoproteomics Reveals Signaling Dynamics Involved in Embryogenic Competence Acquisition in Sugarcane
|
Almeida, F. A.; Passamani, L. Z. et al.
|
Proteome Res. 2020, 19 (10), 4145–4157
|
https://doi.org/10.1021/acs.jproteome.0c00652
|
|
The Occurrence of Sulfated Salicinoids in Poplar and Their Formation by Sulfotransferase1
|
Lackus, N. D.; Müller, A. et al.
|
Plant Physiol. 2020, 183 (1), 137–151
|
https://doi.org/10.1104/pp.19.01447
|
|
Identification of Markers of Relapse in EAE Using High-Resolution Quantitative Mass Spectrometry
|
Chase, C. A.; Trementin, G. et al.
|
Immunol. 2020, 204 (1 Supplement), 160.21
|
|
|
LUZP1, a Novel Regulator of Primary Cilia and the Actin Cytoskeleton, Is a Contributing Factor in Townes-Brocks Syndrome
|
Bozal-Basterra, L.; Gonzalez-Santamarta, M. et al.
|
eLife 2020, 9, e55957
|
https://doi.org/10.7554/eLife.55957
|
|
Ectosomal PKM2 Promotes HCC by Inducing Macrophage Differentiation and Remodeling the Tumor Microenvironment
|
Hou, P.; Luo, L. et al.
|
Molecular Cell 2020, 78 (6), 1192-1206.e10
|
https://doi.org/10.1016/j.molcel.2020.05.004
|
|
Feature-Based Molecular Networking in the GNPS Analysis Environment
|
Nothias, L.-F.; Petras, D. et al.
|
Nat Methods 2020, 17 (9), 905–908
|
https://doi.org/10.1038/s41592-020-0933-6
|
|
Targeting Fibroblast Activation Protein: Radiosynthesis and Preclinical Evaluation of an 18 F-Labeled FAP Inhibitor
|
Toms, J.; Kogler, J. et al.
|
Nucl Med 2020, 61 (12), 1806–1813
|
https://doi.org/10.2967/jnumed.120.242958
|
|
Effects of a Pyroglutamyl Pentapeptide Isolated from Fermented Barley Extract on Atopic Dermatitis-like Skin Lesions in Hairless Mouse
|
Maruoka, N.; Watanabe, B. et al.
|
Bioscience, Biotechnology, and Biochemistry 2020, 84 (8), 1696–1705
|
https://doi.org/10.1080/09168451.2020.1762480
|
|
Accelerating Protein Biomarker Discovery and Translation from Proteomics Research for Clinical Utility
|
Chen, J.; Zheng, N.
|
Bioanalysis 2020, 12 (20), 1469–1481
|
https://doi.org/10.4155/bio-2020-0198
|
|
Generation of a Collision Cross Section Library for Multi-Dimensional Plant Metabolomics Using UHPLC-Trapped Ion Mobility-MS/MS
|
Schroeder, M.; Meyer, S. W. et al.
|
Metabolites 2019, 10 (1), 13
|
https://doi.org/10.3390/metabo10010013
|
|
Dynamic Rewiring of the Human Interactome by Interferon Signaling
|
Kerr, C. H.; Skinnider, M. A. et al.
|
Genome Biol 2020, 21 (1), 140
|
https://doi.org/10.1186/s13059-020-02050-y
|
|
The Impact of AckA, Pta, and AckA-Pta Mutations on Growth, Gene Expression and Protein Acetylation in Escherichia Coli K-12
|
Schütze, A.; Benndorf, D. et al.
|
Front. Microbiol. 2020, 11, 233
|
https://doi.org/10.3389/fmicb.2020.00233
|
|
Arachidyl Amido Cholanoic Acid Improves Liver Glucose and Lipid Homeostasis in Nonalcoholic Steatohepatitis via AMPK and MTOR Regulation
|
Fernández-Ramos, D.; Lopitz-Otsoa, F. et al.
|
MWJG 2020, 26 (34), 5101–5117
|
https://doi.org/10.3748/wjg.v26.i34.5101
|
|
Semiquantitative Proteomic Research of Protein Plasma Profile of Volunteers in 21-Day Head-Down Bed Rest
|
Kashirina, D. N.; Brzhozovskiy, A. G. et al.
|
Front. Physiol. 2020, 11, 678
|
https://doi.org/10.3389/fphys.2020.00678
|
|
Prenatal Endotoxin Exposure Induces Fetal and Neonatal Renal Inflammation via Innate and Th1 Immune Activation in Preterm Pigs
|
Muk, T.; Jiang, P.-P. et al.
|
Front. Immunol. 2020, 11, 565484
|
https://doi.org/10.3389/fimmu.2020.565484
|
|
Multiple Signaling Roles of CD3ε and Its Application in CAR-T Cell Therapy
|
Wu, W.; Zhou, Q. et al.
|
Cell 2020, 182 (4), 855-871.e23
|
https://doi.org/10.1016/j.cell.2020.07.018
|
|
Identification of Modified Peptides Using Localization-Aware Open Search
|
Yu, F.; Teo, G. C. et al.
|
INat Commun 2020, 11 (1), 4065
|
https://doi.org/10.1038/s41467-020-17921-y
|
|
Connecting the Dots on Vertical Transmission of SARS-CoV-2 Using Protein-Protein Interaction Network Analysis – Potential Roles of Placental ACE2 and ENDOU
|
Jing, H.; Ackerman, W. E. et al.
|
Placenta 2021, 104, 16–19
|
https://doi.org/10.1016/j.placenta.2020.11.001
|
|
Deep learning the collisional cross sections of the peptide universe from a million training samples (preprint)
|
Meier, F., Köhler, N.D. et al.
|
Systems Biology, 2021
|
https://doi.org/10.1101/2020.05.19.102285
|
|
Benefits of Collisional Cross Section Assisted Precursor Selection (Caps-PASEF) for Cross-Linking Mass Spectrometry
|
Steigenberger, B.; van den Toorn, H. et al.
|
Mol Cell Proteomics 2020, mcp
|
https://doi.org/10.1074/mcp.RA120.002094
|
|
Ethanolamine Phosphate on the Second Mannose as Bridge in GPI Anchored Proteins: Towards Understanding Inherited PIGG Deficiency
|
Ishida, M.; Maki, Y. et al.
|
preprint; Molecular Biology, 2020
|
https://doi.org/10.1101/2020.11.26.399477
|
|
Phosphorylation profile of human AQP2 in urinary exosomes by LC–MS/MS phosphoproteomic analysis
|
Sakai, M., Yamamoto, K. et al.
|
Clin Exp Nephrol, 2020
|
https://doi.org/10.1007/s10157-020-01899-4
|
|
Enrichment-Free Identification of Native Definitive (EnFIND) O-glycoproteome of antibodies in autoimmune diseases (preprint)
|
Sun, X., Cheng, J. et al.
|
Systems Biology, 2020
|
https://doi.org/10.1101/2020.07.15.204511
|
|
Fast quantitative analysis of timsTOF PASEF data with MSFragger and IonQuant (preprint)
|
Yu, F., Haynes, S.E. et al.
|
Bioinformatics, 2020
|
https://doi.org/10.1101/2020.03.19.999334
|
|
Cytoplasmic MRNA Recapping Has Limited Impact on Proteome Complexity
|
Agana, B. A.; Wysocki, V. H. et al.
|
Open Biol. 2020, 10 (11), 200313
|
https://doi.org/10.1098/rsob.200313
|
|
Proteomic profiling of mitochondrial-derived vesicles in brain reveals enrichment of respiratory complex sub-assemblies and small TIM chaperones (preprint)
|
Roberts, R.F., Bayne, A.N. et al.
|
Biochemistry, 2020
|
https://doi.org/10.1101/2020.07.06.189993
|
|
c-Src Promotes Tumorigenesis and Tumor Progression by Activating PFKFB3
|
Ma, H., Zhang, J. et al.
|
Cell Reports 2020, 30, 4235-4249.e6
|
https://doi.org/10.1016/j.celrep.2020.03.005
|
|
Dephosphorylation of cGAS by PPP6C impairs its substrate binding activity and innate antiviral response
|
Li, M., Shu, H.-B.
|
Protein Cell 2020, 11, 584–599
|
https://doi.org/10.1007/s13238-020-00729-3
|
|
An intracellular membrane protein GEP1 regulates xanthurenic acid induced gametogenesis of malaria parasites
|
Jiang, Y., Wei, J. et al.
|
Nat Commun 2020, 11, 1764
|
https://doi.org/10.1038/s41467-020-15479-3
|
|
Quantitatively profiling acetylome of DNA repair proteins in early DNA damage (preprint)
|
Li, S., Zhou, L. et al.
|
In Review, 2020
|
https://doi.org/10.21203/rs.3.rs-44043/v1
|
|
MaxQuant software for ion mobility enhanced shotgun proteomics
|
Prianichnikov, N., Koch, H. et al.
|
Mol Cell Proteomics, 2020
|
https://doi.org/10.1074/mcp.TIR119.001720
|
|
UBB pseudogene 4 encodes functional ubiquitin variants
|
Dubois, M.-L., Meller, A. et al.
|
Nat Commun 2020, 11, 1306
|
https://doi.org/10.1038/s41467-020-15090-6
|
|
MS-DIAL 4: accelerating lipidomics using an MS/MS, CCS, and retention time atlas (preprint)
|
Tsugawa, H., Ikeda, K. et al.
|
Bioinformatics, 2020
|
https://doi.org/10.1101/2020.02.11.944900
|
|
Characterization and regulation of extracellular vesicles in the lumen of the ovine uterus
|
O’Neil, E.V., Burns, G.W. et al.
|
Biology of Reproduction 2020, 102, 1020–1032
|
https://doi.org/10.1093/biolre/ioaa019
|
|
Low collision energy fragmentation in structure-specific glycoproteomics analysis
|
Sanda, M., Benicky, J. et al.
|
Anal. Chem. 2020
|
https://doi.org/10.1021/acs.analchem.0c00519
|
|
Spatial Metabolomics of the Human Kidney using MALDI Trapped Ion Mobility Imaging
|
Neumann, E.K., Migas, L.G. et al.
|
Mass Spectrometry n.d., 9
|
|
|
Extending the Separation Space with Trapped Ion Mobility Spectrometry Improves the Accuracy of Isobaric Tag-based Quantitation in Proteomic LC/MS/MS
|
Ogata, K., Ishihama, Y.
|
Anal. Chem. 2020
|
https://doi.org/10.1021/acs.analchem.0c01695
|
|
An effector caspase Sp-caspase first identified in mud crab Scylla paramamosain exhibiting immune response and cell apoptosis
|
Li, J., Dong, L. et al.
|
Fish & Shellfish Immunology 2020, S1050464820303715
|
https://doi.org/10.1016/j.fsi.2020.05.045
|
|
Exploration of human cerebrospinal fluid: A large proteome dataset revealed by trapped ion mobility time-of-flight mass spectrometry
|
Macron, C., Lavigne, R. et al.
|
Data in Brief 2020, 31, 105704
|
https://doi.org/10.1016/j.dib.2020.105704
|
|
Developing a multivariable prediction model for functional outcome after reperfusion therapy for acute ischaemic stroke: study protocol for the Targeting Optimal Thrombolysis Outcomes (TOTO) multicentre cohort study
|
Holliday, E., Lillicrap, T. et al.
|
BMJ Open 2020, 10, e038180
|
https://doi.org/10.1136/bmjopen-2020-038180
|
|
Biallelic variants in SLC35C1 as a cause of isolated short stature with intellectual disability
|
Knapp, K.M., Luu, R. et al.
|
J Hum Genet, 2020
|
https://doi.org/10.1038/s10038-020-0764-4
|
|
Quantitative Proteomic Analysis of Chikungunya Virus-Infected Aedes aegypti Reveals Proteome Modulations Indicative of Persistent Infection
|
Cui, Y., Liu, P. et al.
|
J. Proteome Res. 2020
|
https://doi.org/10.1021/acs.jproteome.0c00173
|
|
Relative Quantitation of Subclass-Specific Murine IgG Fc N -Glycoforms by Multiple Reaction Monitoring
|
Han, J., Liu, Q. et al.
|
ACS Omega 2020, 5, 8564–8571
|
https://doi.org/10.1021/acsomega.9b04412
|
|
Trapped ion mobility spectrometry and PASEF enable in-depth lipidomics from minimal sample amounts
|
Vasilopoulou, C.G., Sulek, K. et al.
|
Nat Commun 2020, 11, 331
|
https://doi.org/10.1038/s41467-019-14044-x
|
|
In-depth proteomics and natural peptidomics analyses reveal antibacterial peptides in human endometrial fluid
|
Azkargorta, M., Bregón-Villahoz, M. et al.
|
Journal of Proteomics 2020, 103652
|
https://doi.org/10.1016/j.jprot.2020.103652
|
|
The Complex Response of Free and Bound Amino Acids to Water Stress During the Seed Setting Stage in Arabidopsis
|
Yobi, A., Bagaza, C. et al.
|
Plant J 2020, tpj.14668
|
https://doi.org/10.1111/tpj.14668
|
|
Combination of intact, middle-up and bottom-up levels to characterize 7 therapeutic monoclonal antibodies by capillary electrophoresis
|
Giorgetti, J., Beck, A. et al.
|
Mass spectrometry. Journal of Pharmaceutical and Biomedical Analysis, 2020, 182, 113107
|
https://doi.org/10.1016/j.jpba.2020.113107
|
|
Differential Post-Translational Amino Acid Isomerization Found among Neuropeptides in Aplysia californica
|
Mast, D.H., Checco, J.W. et al.
|
ACS Chem. Biol. 2020
|
https://doi.org/10.1021/acschembio.9b00910
|
|
Identification of 56 Proteins Involved in Embryo–Maternal Interactions in the Bovine Oviduct
|
Banliat, C., Tsikis, G. et al.
|
IJMS 2020, 21, 466
|
https://doi.org/10.3390/ijms21020466
|
|
Parallel accumulation – serial fragmentation combined with data-independent acquisition (diaPASEF): Bottom-up proteomics with near optimal ion usage
|
Meier, F.; Brunner A. et al.
|
bioRxiv 656207
|
https://doi.org/10.1101/656207
|
|
Single-Cell Proteomic and Transcriptomic Analysis of Macrophage Heterogeneity
|
Specht, H.; Emmott, E.; Slavov, N. et al.
|
preprint; Immunology, 2019
|
https://doi.org/10.1101/665307
|
|
Regulation of macrophage activity by surface receptors contained within Borrelia burgdorferi-enriched phagosomal fractions
|
Carreras-González, A., Barriales, D. et al.
|
PLoS Pathog 2019, 15, e1008163
|
https://doi.org/10.1371/journal.ppat.1008163
|
|
The MPK8-TCP14 pathway promotes seed germination in Arabidopsis
|
Zhang, W.; Cochet, F. et al.
|
The Plant Journal, 2019
|
https://doi.org/10.1111/tpj.14461
|
|
Expression of a dominant‐negative AtNEET‐H89C protein disrupts iron‐sulfur metabolism and iron homeostasis in Arabidopsis
|
Zandalinas. S.; Song, L. et al.
|
The Plant Journal, 2019
|
https://doi.org/10.1111/tpj.14581
|
|
Chronic Elevation of Endothelin-1 Alone May Not Be Sufficient to Impair Endothelium-Dependent Relaxation
|
Grunewald, Z. I.; Jurrissen, T. J. et al.
|
Hypertension, 2019
|
https://doi.org/10.1161/HYPERTENSIONAHA.119.13676
|
|
Characterization of an evolutionarily conserved calcitonin signalling system in a lophotrochozoan, the Pacific oyster (Crassostrea gigas)
|
Schwartz, J.; Réalis-Doyelle, E. et al.
|
Journal of Experimental Biology, 2019
|
https://doi:10.1242/jeb.201319
|
|
Recent advances in biological separations using trapped ion mobility spectrometry – mass spectrometry
|
Jeanne Dit Fouque, K.; Fernandez-Lima, F
|
TrAC Trends in Analytical Chemistry 2019, 116, 308–315
|
https://doi.org/10.1016/j.trac.2019.04.010
|
|
Mass spectrometry analysis of mouse hematopoietic stem cells and their progenitors reveals differential expression within and between proteome and transcriptome throughout adult and aged hematopoiesis (preprint)
|
Zaro, B.W.; Noh, J.J. et al.
|
Cell Biology, 2019
|
https://doi.org/10.1101/836692
|
|
Protein 18 Is Involved in Chloroplast Function and Thylakoid Formation
|
Espinoza-Corral, R.; Heinz, S. et al.
|
Plastoglobular Journal of Experimental Botany 2019, 70 (15), 3981–3993
|
https://doi.org/10.1093/jxb/erz177
|
|
SUMO-Binding Entities (SUBEs) as Tools for the Enrichment, Isolation, Identification, and Characterization of the SUMO Proteome in Liver Cancer
|
Lopitz-Otsoa, F.; Delgado, T. C. et al.
|
JoVE 2019, No. 153, 60098
|
https://doi.org/10.3791/60098
|
|
Methods and Guidelines for Measurement of Glucagon in Plasma
|
Holst, J. J.; Wewer Albrechtsen, N. J.
|
IJMS 2019, 20 (21), 5416
|
https://doi.org/10.3390/ijms20215416
|
|
Sclerotinia Sclerotiorum Circumvents Flavonoid Defenses by Catabolizing Flavonol Glycosides and Aglycones
|
Chen, J.; Ullah, C. et al.
|
Plant Physiol. 2019, 180 (4), 1975–1987
|
https://doi.org/10.1104/pp.19.00461
|
|
A. Linear and Differential Ion Mobility Separations of Middle-Down Proteoforms
|
Garabedian, A.; Baird, M. A. et al.
|
Anal. Chem. 2018, 90 (4), 2918–2925
|
https://doi.org/10.1021/acs.analchem.7b05224
|
